Variant report

Variant	rs1424368
Chromosome Location	chr7:137359182-137359183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137358034..137360973-chr7:137366222..137368060,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10155828	0.88[ASN][1000 genomes]
rs10155832	0.88[ASN][1000 genomes]
rs10155936	0.88[ASN][1000 genomes]
rs10156007	1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs10156042	0.88[ASN][1000 genomes]
rs10216163	0.91[ASN][1000 genomes]
rs10235994	0.91[ASN][1000 genomes]
rs10248705	0.89[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10267021	0.91[ASN][1000 genomes]
rs10268869	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10269622	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10270098	0.89[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10273283	0.89[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10273400	1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs10276318	0.91[ASN][1000 genomes]
rs11971088	0.82[JPT][hapmap]
rs11971888	0.88[ASN][1000 genomes]
rs11975858	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs11978263	0.88[ASN][1000 genomes]
rs11982810	0.89[CHD][hapmap]
rs13438479	0.87[ASN][1000 genomes]
rs1424367	1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs1424369	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2037677	0.88[ASN][1000 genomes]
rs2037678	0.88[ASN][1000 genomes]
rs28509418	0.88[ASN][1000 genomes]
rs28625107	0.88[ASN][1000 genomes]
rs28633970	0.83[ASN][1000 genomes]
rs28713573	0.88[ASN][1000 genomes]
rs28735762	0.83[ASN][1000 genomes]
rs35323708	0.91[ASN][1000 genomes]
rs36002118	0.88[ASN][1000 genomes]
rs3778789	1.00[CHD][hapmap]
rs3778791	0.91[ASN][1000 genomes]
rs3778792	0.91[ASN][1000 genomes]
rs3778793	0.91[ASN][1000 genomes]
rs3778794	0.91[ASN][1000 genomes]
rs3800616	1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs3800617	0.88[ASN][1000 genomes]
rs3800618	0.88[ASN][1000 genomes]
rs3800620	1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs3800621	1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs3823550	1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs56704414	0.88[ASN][1000 genomes]
rs56755769	0.91[ASN][1000 genomes]
rs57306865	0.88[ASN][1000 genomes]
rs57826418	0.91[ASN][1000 genomes]
rs58551805	0.88[ASN][1000 genomes]
rs58572040	0.88[ASN][1000 genomes]
rs59189421	0.88[ASN][1000 genomes]
rs59284501	0.88[ASN][1000 genomes]
rs59473559	0.95[ASN][1000 genomes]
rs59893286	0.88[ASN][1000 genomes]
rs60053545	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60180583	0.88[ASN][1000 genomes]
rs61140981	0.83[ASN][1000 genomes]
rs6467713	1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs6946782	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6946901	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6947070	0.88[ASN][1000 genomes]
rs6948268	0.88[ASN][1000 genomes]
rs6957431	0.88[ASN][1000 genomes]
rs6973534	0.88[ASN][1000 genomes]
rs6979919	1.00[CHD][hapmap]
rs73444503	0.88[ASN][1000 genomes]
rs73444506	0.88[ASN][1000 genomes]
rs73730089	1.00[ASN][1000 genomes]
rs73730092	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73730095	1.00[ASN][1000 genomes]
rs73730096	0.95[ASN][1000 genomes]
rs73730098	0.95[ASN][1000 genomes]
rs73731004	0.83[ASN][1000 genomes]
rs7458662	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7459099	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7786978	0.88[ASN][1000 genomes]
rs7787201	0.88[ASN][1000 genomes]
rs7788632	0.87[CHD][hapmap]
rs7789901	1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs7797609	0.91[ASN][1000 genomes]
rs7797692	0.88[ASN][1000 genomes]
rs7801047	0.84[ASN][1000 genomes]
rs7803200	0.88[ASN][1000 genomes]
rs7806701	0.88[ASN][1000 genomes]
rs7806721	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137355800-137370600	Weak transcription	Aorta	Aorta
2	chr7:137356000-137361800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:137356400-137365800	Weak transcription	HSMM	muscle
4	chr7:137357000-137359400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:137357000-137366400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:137357000-137367600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:137357200-137361000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:137357400-137360800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:137357400-137365600	Weak transcription	Osteobl	bone
10	chr7:137358000-137359400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:137358000-137359600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:137358000-137359600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:137358000-137360000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:137358000-137360200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:137358000-137360600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:137358000-137360800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:137358200-137359800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:137358200-137361000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:137358600-137360600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:137359000-137359200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr7:137359000-137359200	Enhancers	HSMMtube	muscle

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