Variant report
Variant | rs7788632 |
---|---|
Chromosome Location | chr7:137319101-137319102 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:137309099..137314515-chr7:137316630..137319119,5 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10155828 | 0.86[JPT][hapmap] |
rs10155832 | 0.86[JPT][hapmap] |
rs10155936 | 0.86[JPT][hapmap] |
rs10156007 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs10156042 | 0.86[JPT][hapmap] |
rs10225653 | 1.00[EUR][1000 genomes] |
rs10246705 | 1.00[EUR][1000 genomes] |
rs10246933 | 1.00[EUR][1000 genomes] |
rs10255024 | 1.00[EUR][1000 genomes] |
rs10255560 | 1.00[EUR][1000 genomes] |
rs10262164 | 1.00[EUR][1000 genomes] |
rs10267971 | 1.00[EUR][1000 genomes] |
rs10272169 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
rs10273400 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs10275097 | 0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11489681 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
rs11971016 | 0.86[JPT][hapmap];1.00[ASN][1000 genomes] |
rs11971088 | 0.84[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11975858 | 0.84[JPT][hapmap] |
rs11978263 | 0.86[JPT][hapmap] |
rs11982810 | 1.00[ASW][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs13438478 | 1.00[EUR][1000 genomes] |
rs1424367 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs1424368 | 0.87[CHD][hapmap] |
rs2037677 | 0.86[JPT][hapmap] |
rs2037678 | 0.86[JPT][hapmap] |
rs28366575 | 1.00[EUR][1000 genomes] |
rs28386845 | 1.00[EUR][1000 genomes] |
rs28447315 | 1.00[EUR][1000 genomes] |
rs28454188 | 1.00[EUR][1000 genomes] |
rs28477975 | 1.00[EUR][1000 genomes] |
rs28568341 | 1.00[EUR][1000 genomes] |
rs28650094 | 1.00[EUR][1000 genomes] |
rs28666460 | 1.00[EUR][1000 genomes] |
rs28787723 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3778784 | 0.86[JPT][hapmap];1.00[ASN][1000 genomes] |
rs3778786 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3778787 | 0.86[JPT][hapmap];1.00[ASN][1000 genomes] |
rs3778789 | 0.87[CHD][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3778792 | 0.84[JPT][hapmap] |
rs3800615 | 0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
rs3800616 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs3800617 | 0.86[JPT][hapmap] |
rs3800618 | 0.86[JPT][hapmap] |
rs3800620 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs3800621 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs3823550 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs58245080 | 1.00[ASN][1000 genomes] |
rs58503212 | 0.87[ASN][1000 genomes] |
rs59626548 | 1.00[ASN][1000 genomes] |
rs59811187 | 1.00[ASN][1000 genomes] |
rs6467711 | 1.00[EUR][1000 genomes] |
rs6467712 | 0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6467713 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs6946782 | 0.84[JPT][hapmap] |
rs6946901 | 0.84[JPT][hapmap] |
rs6947070 | 0.86[JPT][hapmap] |
rs6947756 | 0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6957431 | 0.86[JPT][hapmap] |
rs6963303 | 1.00[EUR][1000 genomes] |
rs6971321 | 1.00[EUR][1000 genomes] |
rs6971485 | 1.00[EUR][1000 genomes] |
rs6971557 | 1.00[EUR][1000 genomes] |
rs6977485 | 1.00[EUR][1000 genomes] |
rs6977795 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
rs6979919 | 0.87[CHD][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs706573 | 1.00[EUR][1000 genomes] |
rs706577 | 1.00[EUR][1000 genomes] |
rs73461023 | 0.90[ASN][1000 genomes] |
rs73461041 | 1.00[ASN][1000 genomes] |
rs73461053 | 1.00[ASN][1000 genomes] |
rs73461054 | 1.00[ASN][1000 genomes] |
rs73461063 | 1.00[ASN][1000 genomes] |
rs7786978 | 0.86[JPT][hapmap] |
rs7787201 | 0.86[JPT][hapmap] |
rs7789901 | 0.87[CHD][hapmap];0.86[JPT][hapmap] |
rs7796970 | 0.93[ASN][1000 genomes] |
rs7797692 | 0.86[JPT][hapmap] |
rs7801047 | 0.86[JPT][hapmap] |
rs7811058 | 1.00[EUR][1000 genomes] |
rs7811524 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869820 | chr7:136990386-137347718 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1022793 | chr7:137187383-137619359 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
3 | esv1812888 | chr7:137283212-137366467 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:137277200-137326800 | Weak transcription | Osteobl | bone |
2 | chr7:137282800-137337400 | Weak transcription | HSMMtube | muscle |
3 | chr7:137294000-137328400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
4 | chr7:137297600-137324200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
5 | chr7:137304600-137319200 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
6 | chr7:137304800-137320000 | Weak transcription | Aorta | Aorta |
7 | chr7:137313200-137328400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
8 | chr7:137313600-137321800 | Weak transcription | Brain Germinal Matrix | brain |