Variant report

Variant	rs10275097
Chromosome Location	chr7:137324640-137324641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10155828	1.00[JPT][hapmap]
rs10155832	1.00[JPT][hapmap]
rs10155936	1.00[JPT][hapmap]
rs10156007	1.00[JPT][hapmap]
rs10156042	1.00[JPT][hapmap]
rs10225653	1.00[EUR][1000 genomes]
rs10246705	1.00[EUR][1000 genomes]
rs10246933	1.00[EUR][1000 genomes]
rs10255024	1.00[EUR][1000 genomes]
rs10255560	1.00[EUR][1000 genomes]
rs10262164	1.00[EUR][1000 genomes]
rs10267971	1.00[EUR][1000 genomes]
rs10272169	1.00[EUR][1000 genomes]
rs10273400	1.00[JPT][hapmap]
rs11489681	1.00[EUR][1000 genomes]
rs11971016	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11971088	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975858	1.00[JPT][hapmap]
rs11978263	1.00[JPT][hapmap]
rs11982810	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13438478	1.00[EUR][1000 genomes]
rs1424367	1.00[JPT][hapmap]
rs2037677	1.00[JPT][hapmap]
rs2037678	1.00[JPT][hapmap]
rs28366575	1.00[EUR][1000 genomes]
rs28386845	1.00[EUR][1000 genomes]
rs28447315	1.00[EUR][1000 genomes]
rs28454188	1.00[EUR][1000 genomes]
rs28477975	1.00[EUR][1000 genomes]
rs28568341	1.00[EUR][1000 genomes]
rs28650094	1.00[EUR][1000 genomes]
rs28666460	1.00[EUR][1000 genomes]
rs28787723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778784	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3778786	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778787	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3778789	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778792	1.00[JPT][hapmap]
rs3800615	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3800616	1.00[JPT][hapmap]
rs3800617	1.00[JPT][hapmap]
rs3800618	1.00[JPT][hapmap]
rs3800620	1.00[JPT][hapmap]
rs3800621	1.00[JPT][hapmap]
rs3823550	1.00[JPT][hapmap]
rs58245080	1.00[ASN][1000 genomes]
rs58503212	0.87[ASN][1000 genomes]
rs59626548	1.00[ASN][1000 genomes]
rs59811187	1.00[ASN][1000 genomes]
rs6467711	1.00[EUR][1000 genomes]
rs6467712	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467713	1.00[JPT][hapmap]
rs6946782	1.00[JPT][hapmap]
rs6946901	1.00[JPT][hapmap]
rs6947070	1.00[JPT][hapmap]
rs6947756	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957431	1.00[JPT][hapmap]
rs6963303	1.00[EUR][1000 genomes]
rs6971321	1.00[EUR][1000 genomes]
rs6971485	1.00[EUR][1000 genomes]
rs6971557	1.00[EUR][1000 genomes]
rs6977485	1.00[EUR][1000 genomes]
rs6977795	1.00[EUR][1000 genomes]
rs6979919	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs706573	1.00[EUR][1000 genomes]
rs706577	1.00[EUR][1000 genomes]
rs73461023	0.90[ASN][1000 genomes]
rs73461041	1.00[ASN][1000 genomes]
rs73461053	1.00[ASN][1000 genomes]
rs73461054	1.00[ASN][1000 genomes]
rs73461063	1.00[ASN][1000 genomes]
rs7786978	1.00[JPT][hapmap]
rs7787201	1.00[JPT][hapmap]
rs7788632	0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789901	1.00[JPT][hapmap]
rs7796970	0.93[ASN][1000 genomes]
rs7797692	1.00[JPT][hapmap]
rs7801047	1.00[JPT][hapmap]
rs7811058	1.00[EUR][1000 genomes]
rs7811524	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137277200-137326800	Weak transcription	Osteobl	bone
2	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
3	chr7:137294000-137328400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:137313200-137328400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
6	chr7:137320400-137328400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:137321200-137326800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:137321400-137337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:137321600-137325600	Weak transcription	Fetal Brain Female	brain
10	chr7:137324000-137325400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:137324000-137325400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:137324200-137325200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:137324200-137325400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr7:137324200-137325400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links