Variant report

Variant	rs3778784
Chromosome Location	chr7:137320542-137320543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137319572..137321937-chr7:137325565..137327156,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10155828	1.00[JPT][hapmap]
rs10155832	1.00[JPT][hapmap]
rs10155936	1.00[JPT][hapmap]
rs10156007	1.00[JPT][hapmap]
rs10156042	1.00[JPT][hapmap]
rs10273400	1.00[JPT][hapmap]
rs10275097	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11971016	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11971088	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11975858	1.00[JPT][hapmap]
rs11978263	1.00[JPT][hapmap]
rs11982810	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1424367	1.00[JPT][hapmap]
rs2037677	1.00[JPT][hapmap]
rs2037678	1.00[JPT][hapmap]
rs28787723	1.00[ASN][1000 genomes]
rs3778786	1.00[ASN][1000 genomes]
rs3778787	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3778789	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3778792	1.00[JPT][hapmap]
rs3800615	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3800616	1.00[JPT][hapmap]
rs3800617	1.00[JPT][hapmap]
rs3800618	1.00[JPT][hapmap]
rs3800620	1.00[JPT][hapmap]
rs3800621	1.00[JPT][hapmap]
rs3823550	1.00[JPT][hapmap]
rs58245080	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58503212	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59626548	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59811187	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6467712	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6467713	1.00[JPT][hapmap]
rs6946782	1.00[JPT][hapmap]
rs6946901	1.00[JPT][hapmap]
rs6947070	1.00[JPT][hapmap]
rs6947756	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6957431	1.00[JPT][hapmap]
rs6979919	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73455308	1.00[AMR][1000 genomes]
rs73455324	1.00[AMR][1000 genomes]
rs73461023	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73461041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73461053	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73461054	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73461063	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7786978	1.00[JPT][hapmap]
rs7787201	1.00[JPT][hapmap]
rs7788632	0.86[JPT][hapmap];1.00[ASN][1000 genomes]
rs7789901	1.00[JPT][hapmap]
rs7796970	0.93[ASN][1000 genomes]
rs7797692	1.00[JPT][hapmap]
rs7801047	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137277200-137326800	Weak transcription	Osteobl	bone
2	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
3	chr7:137294000-137328400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:137297600-137324200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:137313200-137328400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:137313600-137321800	Weak transcription	Brain Germinal Matrix	brain
7	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
8	chr7:137320400-137328400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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