Variant report

Variant	rs3800620
Chromosome Location	chr7:137345592-137345593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10155828	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10155832	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10155936	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10156007	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10156042	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10216163	0.92[ASN][1000 genomes]
rs10235994	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10248705	0.89[CHD][hapmap]
rs10267021	0.92[ASN][1000 genomes]
rs10270098	0.89[CHD][hapmap]
rs10273283	0.89[CHD][hapmap]
rs10273400	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10275097	1.00[JPT][hapmap]
rs10276318	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11971016	1.00[JPT][hapmap]
rs11971088	1.00[JPT][hapmap]
rs11971888	0.88[ASN][1000 genomes]
rs11975858	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11978263	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11982810	0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs13438479	0.88[ASN][1000 genomes]
rs1424367	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1424368	1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs2037677	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2037678	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28509418	0.88[ASN][1000 genomes]
rs28625107	0.88[ASN][1000 genomes]
rs28713573	0.88[ASN][1000 genomes]
rs35323708	0.92[ASN][1000 genomes]
rs36002118	0.88[ASN][1000 genomes]
rs3778784	1.00[JPT][hapmap]
rs3778787	1.00[JPT][hapmap]
rs3778789	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3778791	0.92[ASN][1000 genomes]
rs3778792	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3778793	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3778794	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3800615	1.00[JPT][hapmap]
rs3800616	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3800617	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3800618	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3800621	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3823550	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56704414	0.88[ASN][1000 genomes]
rs56755769	0.92[ASN][1000 genomes]
rs57306865	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57826418	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58551805	0.88[ASN][1000 genomes]
rs58572040	0.88[ASN][1000 genomes]
rs59189421	0.88[ASN][1000 genomes]
rs59284501	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59473559	0.88[ASN][1000 genomes]
rs59893286	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60053545	0.84[ASN][1000 genomes]
rs60180583	0.96[ASN][1000 genomes]
rs6467712	1.00[JPT][hapmap]
rs6467713	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6946782	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6946901	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6947070	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6947756	1.00[JPT][hapmap]
rs6948268	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6957431	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6973534	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6979919	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs73444503	0.88[ASN][1000 genomes]
rs73444506	0.88[ASN][1000 genomes]
rs73730089	0.84[ASN][1000 genomes]
rs73730092	0.84[ASN][1000 genomes]
rs73730095	0.84[ASN][1000 genomes]
rs73730096	0.80[ASN][1000 genomes]
rs73730098	0.80[ASN][1000 genomes]
rs7786978	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7787201	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7788632	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7789901	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7796970	1.00[EUR][1000 genomes]
rs7797609	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7797692	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7801047	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7803200	0.88[ASN][1000 genomes]
rs7806701	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7806721	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs918815	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
2	chr7:137328400-137348000	Weak transcription	Fetal Brain Male	brain
3	chr7:137338000-137346400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:137340800-137351800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:137341600-137351800	Weak transcription	NHDF-Ad	bronchial
6	chr7:137341800-137351800	Weak transcription	NH-A	brain
7	chr7:137342200-137349800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:137342400-137351600	Weak transcription	HSMM	muscle
9	chr7:137342400-137352000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:137342600-137348000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:137342600-137349600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:137342600-137351400	Weak transcription	HSMMtube	muscle
13	chr7:137342600-137352000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:137343200-137346200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:137343200-137352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:137343200-137353000	Weak transcription	Right Atrium	heart
17	chr7:137343400-137348200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:137343600-137346000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:137343600-137349600	Weak transcription	Osteobl	bone
20	chr7:137343800-137359000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr7:137344000-137346200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:137344000-137346600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:137344000-137349600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:137344000-137349800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:137344000-137350000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:137344000-137350400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:137344000-137358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:137344200-137349800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:137344400-137349600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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