Variant report

Variant	rs10235994
Chromosome Location	chr7:137349827-137349828
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137348720..137350884-chr7:138042291..138044581,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10155828	0.96[ASN][1000 genomes]
rs10155832	0.96[ASN][1000 genomes]
rs10155936	0.96[ASN][1000 genomes]
rs10156007	0.96[ASN][1000 genomes]
rs10156042	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10216163	1.00[ASN][1000 genomes]
rs10267021	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10268869	0.83[ASN][1000 genomes]
rs10273400	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10276318	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971888	0.96[ASN][1000 genomes]
rs11975858	0.96[ASN][1000 genomes]
rs11978263	0.96[ASN][1000 genomes]
rs13438479	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1424367	1.00[ASN][1000 genomes]
rs1424368	0.91[ASN][1000 genomes]
rs2037677	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2037678	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28509418	0.96[ASN][1000 genomes]
rs28625107	0.96[ASN][1000 genomes]
rs28713573	0.96[ASN][1000 genomes]
rs35323708	1.00[ASN][1000 genomes]
rs36002118	0.96[ASN][1000 genomes]
rs3778791	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3778792	1.00[ASN][1000 genomes]
rs3778793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778794	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800616	0.96[ASN][1000 genomes]
rs3800617	0.96[ASN][1000 genomes]
rs3800618	0.96[ASN][1000 genomes]
rs3800620	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3800621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823550	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56704414	0.96[ASN][1000 genomes]
rs56755769	1.00[ASN][1000 genomes]
rs57306865	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57826418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58551805	0.96[ASN][1000 genomes]
rs58572040	0.96[ASN][1000 genomes]
rs59189421	0.96[ASN][1000 genomes]
rs59284501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59473559	0.96[ASN][1000 genomes]
rs59893286	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60053545	0.91[ASN][1000 genomes]
rs60180583	0.96[ASN][1000 genomes]
rs6467713	0.96[ASN][1000 genomes]
rs6946782	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6946901	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6947070	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6948268	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6957431	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6973534	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73444503	0.96[ASN][1000 genomes]
rs73444506	0.96[ASN][1000 genomes]
rs73730089	0.91[ASN][1000 genomes]
rs73730092	0.91[ASN][1000 genomes]
rs73730095	0.91[ASN][1000 genomes]
rs73730096	0.87[ASN][1000 genomes]
rs73730098	0.87[ASN][1000 genomes]
rs7786978	0.96[ASN][1000 genomes]
rs7787201	0.96[ASN][1000 genomes]
rs7789901	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7796970	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7797609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797692	0.96[ASN][1000 genomes]
rs7801047	0.92[ASN][1000 genomes]
rs7803200	0.96[ASN][1000 genomes]
rs7806701	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7806721	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
2	chr7:137340800-137351800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:137341600-137351800	Weak transcription	NHDF-Ad	bronchial
4	chr7:137341800-137351800	Weak transcription	NH-A	brain
5	chr7:137342400-137351600	Weak transcription	HSMM	muscle
6	chr7:137342400-137352000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:137342600-137351400	Weak transcription	HSMMtube	muscle
8	chr7:137342600-137352000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:137343200-137352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:137343200-137353000	Weak transcription	Right Atrium	heart
11	chr7:137343800-137359000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:137344000-137350000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:137344000-137350400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:137344000-137358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:137346600-137352600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:137346600-137354400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:137349400-137350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:137349400-137350400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:137349600-137350000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:137349600-137350200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:137349600-137350200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr7:137349600-137350200	Enhancers	Osteobl	bone
23	chr7:137349600-137350400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:137349600-137352800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:137349800-137350000	Enhancers	GM12878-XiMat	blood
26	chr7:137349800-137350200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:137349800-137350200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:137349800-137350400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr7:137349800-137351000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:137349800-137354200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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