Variant report

Variant	rs3800616
Chromosome Location	chr7:137328375-137328376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137326769..137328624-chr7:137333042..137335540,3	K562	blood:
2	chr7:137325069..137326680-chr7:137328056..137330129,2	K562	blood:
3	chr7:137327026..137328624-chr7:137333042..137335182,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10155828	1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10155832	1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10155936	1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10156007	0.86[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs10156042	1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10216163	0.96[ASN][1000 genomes]
rs10235994	0.96[ASN][1000 genomes]
rs10248705	0.89[CHD][hapmap]
rs10267021	0.96[ASN][1000 genomes]
rs10270098	0.89[CHD][hapmap]
rs10273283	0.89[CHD][hapmap]
rs10273400	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10275097	1.00[JPT][hapmap]
rs10276318	0.96[ASN][1000 genomes]
rs11971016	1.00[JPT][hapmap]
rs11971088	1.00[JPT][hapmap]
rs11971888	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11975858	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11978263	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11982810	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs13438479	0.92[ASN][1000 genomes]
rs1424367	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1424368	1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs2037677	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2037678	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28509418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28625107	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28713573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35323708	0.96[ASN][1000 genomes]
rs36002118	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3778784	1.00[JPT][hapmap]
rs3778787	1.00[JPT][hapmap]
rs3778789	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3778791	0.96[ASN][1000 genomes]
rs3778792	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3778793	0.96[ASN][1000 genomes]
rs3778794	0.96[ASN][1000 genomes]
rs3800615	1.00[JPT][hapmap]
rs3800617	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3800618	1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3800620	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3800621	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3823550	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs56704414	1.00[ASN][1000 genomes]
rs56755769	0.96[ASN][1000 genomes]
rs57306865	1.00[ASN][1000 genomes]
rs57826418	0.96[ASN][1000 genomes]
rs58551805	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58572040	1.00[ASN][1000 genomes]
rs59189421	1.00[ASN][1000 genomes]
rs59284501	1.00[ASN][1000 genomes]
rs59473559	0.92[ASN][1000 genomes]
rs59893286	1.00[ASN][1000 genomes]
rs60053545	0.88[ASN][1000 genomes]
rs60180583	0.92[ASN][1000 genomes]
rs6467712	1.00[JPT][hapmap]
rs6467713	0.93[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6946782	1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs6946901	1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs6947070	1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs6947756	1.00[JPT][hapmap]
rs6948268	0.92[ASN][1000 genomes]
rs6957431	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6973534	1.00[ASN][1000 genomes]
rs6979919	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs73444503	1.00[ASN][1000 genomes]
rs73444506	1.00[ASN][1000 genomes]
rs73730089	0.88[ASN][1000 genomes]
rs73730092	0.88[ASN][1000 genomes]
rs73730095	0.88[ASN][1000 genomes]
rs73730096	0.84[ASN][1000 genomes]
rs73730098	0.84[ASN][1000 genomes]
rs7786978	1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7787201	1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7788632	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7789901	0.87[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7797609	0.96[ASN][1000 genomes]
rs7797692	1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7801047	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7803200	1.00[ASN][1000 genomes]
rs7806701	1.00[ASN][1000 genomes]
rs7806721	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
2	chr7:137294000-137328400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:137313200-137328400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
5	chr7:137320400-137328400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:137321400-137337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:137325800-137337400	Weak transcription	HSMM	muscle
8	chr7:137327200-137328400	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr7:137327200-137329000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:137327200-137337400	Weak transcription	Osteobl	bone
11	chr7:137327400-137337200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:137327400-137337200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:137327800-137328400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr7:137328000-137337200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:137328200-137340600	Weak transcription	Adipose Nuclei	Adipose

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