Variant report

Variant	rs59284501
Chromosome Location	chr7:137339760-137339761
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137337604..137340616-chr7:137341640..137344168,3	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10155828	1.00[ASN][1000 genomes]
rs10155832	1.00[ASN][1000 genomes]
rs10155936	1.00[ASN][1000 genomes]
rs10156007	1.00[ASN][1000 genomes]
rs10156042	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216163	0.96[ASN][1000 genomes]
rs10235994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10267021	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10273400	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11971888	1.00[ASN][1000 genomes]
rs11975858	1.00[ASN][1000 genomes]
rs11978263	1.00[ASN][1000 genomes]
rs13438479	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1424367	0.96[ASN][1000 genomes]
rs1424368	0.88[ASN][1000 genomes]
rs2037677	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037678	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28509418	1.00[ASN][1000 genomes]
rs28625107	1.00[ASN][1000 genomes]
rs28713573	1.00[ASN][1000 genomes]
rs35323708	0.96[ASN][1000 genomes]
rs36002118	1.00[ASN][1000 genomes]
rs3778791	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3778792	0.96[ASN][1000 genomes]
rs3778793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3778794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800616	1.00[ASN][1000 genomes]
rs3800617	1.00[ASN][1000 genomes]
rs3800618	1.00[ASN][1000 genomes]
rs3800620	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3823550	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56704414	1.00[ASN][1000 genomes]
rs56755769	0.96[ASN][1000 genomes]
rs57306865	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57826418	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58551805	1.00[ASN][1000 genomes]
rs58572040	1.00[ASN][1000 genomes]
rs59189421	1.00[ASN][1000 genomes]
rs59473559	0.92[ASN][1000 genomes]
rs59893286	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60053545	0.88[ASN][1000 genomes]
rs60180583	0.92[ASN][1000 genomes]
rs6467713	1.00[ASN][1000 genomes]
rs6946782	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946901	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947070	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948268	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6957431	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973534	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73444503	1.00[ASN][1000 genomes]
rs73444506	1.00[ASN][1000 genomes]
rs73730089	0.88[ASN][1000 genomes]
rs73730092	0.88[ASN][1000 genomes]
rs73730095	0.88[ASN][1000 genomes]
rs73730096	0.84[ASN][1000 genomes]
rs73730098	0.84[ASN][1000 genomes]
rs7786978	1.00[ASN][1000 genomes]
rs7787201	1.00[ASN][1000 genomes]
rs7789901	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796970	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7797609	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7797692	1.00[ASN][1000 genomes]
rs7801047	0.96[ASN][1000 genomes]
rs7803200	1.00[ASN][1000 genomes]
rs7806701	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806721	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
2	chr7:137328200-137340600	Weak transcription	Adipose Nuclei	Adipose
3	chr7:137328400-137348000	Weak transcription	Fetal Brain Male	brain
4	chr7:137330000-137341800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:137331200-137341000	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:137332800-137343000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:137333800-137341600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:137335200-137340600	Weak transcription	NH-A	brain
9	chr7:137337200-137339800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:137337600-137340400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:137337800-137340600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:137337800-137341600	Weak transcription	HSMMtube	muscle
13	chr7:137338000-137340200	Weak transcription	Osteobl	bone
14	chr7:137338000-137340400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:137338000-137340400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:137338000-137340600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:137338000-137340600	Weak transcription	HSMM	muscle
18	chr7:137338000-137340800	Weak transcription	NHDF-Ad	bronchial
19	chr7:137338000-137342400	Weak transcription	Right Atrium	heart
20	chr7:137338000-137346400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:137338800-137341600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:137339000-137340200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:137339400-137340400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links