Variant report

Variant	rs3800632
Chromosome Location	chr7:137401812-137401813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137400906..137403879-chr7:137418023..137420463,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10223970	1.00[EUR][1000 genomes]
rs10227387	0.94[ASN][1000 genomes]
rs10229562	1.00[EUR][1000 genomes]
rs10229720	1.00[EUR][1000 genomes]
rs10241560	1.00[EUR][1000 genomes]
rs10248705	1.00[CHB][hapmap]
rs10267096	1.00[EUR][1000 genomes]
rs10269622	1.00[CHB][hapmap]
rs10270098	1.00[CHB][hapmap]
rs10273283	1.00[CHB][hapmap]
rs10275839	1.00[EUR][1000 genomes]
rs28419330	0.94[ASN][1000 genomes]
rs28421417	1.00[EUR][1000 genomes]
rs3735018	1.00[EUR][1000 genomes]
rs3778801	0.94[ASN][1000 genomes]
rs3800625	0.82[ASN][1000 genomes]
rs3800627	0.82[ASN][1000 genomes]
rs55868765	1.00[EUR][1000 genomes]
rs55960820	1.00[EUR][1000 genomes]
rs57402658	1.00[EUR][1000 genomes]
rs58290352	0.94[ASN][1000 genomes]
rs58813961	0.88[ASN][1000 genomes]
rs60207538	0.94[ASN][1000 genomes]
rs61280276	1.00[EUR][1000 genomes]
rs6947666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6972144	1.00[EUR][1000 genomes]
rs73460673	1.00[EUR][1000 genomes]
rs73729083	1.00[EUR][1000 genomes]
rs73729085	1.00[EUR][1000 genomes]
rs73729087	1.00[EUR][1000 genomes]
rs73729089	1.00[EUR][1000 genomes]
rs7458662	1.00[CHB][hapmap]
rs7459099	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137399200-137403200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:137399400-137403600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:137399600-137402600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:137399800-137403200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:137400200-137402600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:137400400-137402800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:137400600-137403800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:137400600-137404000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:137400800-137402200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:137400800-137402400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:137400800-137402400	Weak transcription	NH-A	brain
12	chr7:137400800-137402600	Weak transcription	NHDF-Ad	bronchial
13	chr7:137400800-137403200	Weak transcription	Brain Anterior Caudate	brain
14	chr7:137400800-137403400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:137400800-137404800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:137400800-137405400	Weak transcription	Right Atrium	heart
17	chr7:137401000-137402400	Weak transcription	HSMMtube	muscle
18	chr7:137401000-137402600	Weak transcription	HSMM	muscle
19	chr7:137401000-137402800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:137401000-137403000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:137401600-137402200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr7:137401600-137402400	Enhancers	Osteobl	bone
23	chr7:137401600-137402600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:137401600-137402600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:137401600-137404000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr7:137401800-137402000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:137401800-137402000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:137401800-137402600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr7:137401800-137402800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:137401800-137403600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:137401800-137404000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr7:137401800-137404400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links