Variant report

Variant	rs55960820
Chromosome Location	chr7:137567012-137567013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137561745..137565223-chr7:137565375..137570123,4	K562	blood:
2	chr7:137553992..137556537-chr7:137565349..137567056,2	K562	blood:
3	chr7:137562154..137564910-chr7:137565375..137570111,4	K562	blood:
4	chr7:137463588..137466305-chr7:137566115..137567635,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10223970	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10229562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229720	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267096	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10275839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28421417	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3735018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800632	1.00[EUR][1000 genomes]
rs55868765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57402658	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57979055	1.00[ASN][1000 genomes]
rs61280276	1.00[EUR][1000 genomes]
rs6972144	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460673	1.00[EUR][1000 genomes]
rs73729083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137533800-137575400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137547800-137567200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:137551200-137569400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:137555600-137583200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:137556000-137570800	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr7:137556000-137573600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:137557000-137570600	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr7:137557400-137567200	Genic enhancers	Osteobl	bone
9	chr7:137557800-137583800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:137558400-137571600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr7:137558400-137579200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:137558800-137588400	Weak transcription	Stomach Mucosa	stomach
13	chr7:137559400-137568600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:137559400-137575200	Strong transcription	HepG2	liver
15	chr7:137560000-137570600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:137560000-137570800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:137561000-137577000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:137562600-137567200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:137562600-137570600	Strong transcription	Primary T cells from cord blood	blood
20	chr7:137562600-137570600	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr7:137562600-137570800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:137562600-137570800	Strong transcription	Ovary	ovary
23	chr7:137562600-137571200	Strong transcription	Primary B cells from cord blood	blood
24	chr7:137563000-137568600	Genic enhancers	HSMM	muscle
25	chr7:137563000-137568800	Genic enhancers	NHDF-Ad	bronchial
26	chr7:137563200-137567200	Genic enhancers	NHLF	lung
27	chr7:137563200-137570400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr7:137563200-137572200	Strong transcription	Colonic Mucosa	Colon
29	chr7:137563400-137568200	Genic enhancers	NHEK	skin
30	chr7:137563400-137570600	Strong transcription	Left Ventricle	heart
31	chr7:137563400-137570800	Strong transcription	Stomach Smooth Muscle	stomach
32	chr7:137563400-137575200	Weak transcription	Psoas Muscle	Psoas
33	chr7:137563600-137567200	Genic enhancers	NH-A	brain
34	chr7:137563800-137570200	Genic enhancers	Muscle Satellite Cultured Cells	--
35	chr7:137564000-137567200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:137564400-137567200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:137564400-137568200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr7:137564600-137570600	Strong transcription	Brain Cingulate Gyrus	brain
39	chr7:137564600-137570600	Strong transcription	Brain Substantia Nigra	brain
40	chr7:137564600-137575400	Strong transcription	Placenta Amnion	Placenta Amnion
41	chr7:137564800-137570200	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr7:137564800-137570600	Strong transcription	Brain Hippocampus Middle	brain
43	chr7:137565000-137567400	Strong transcription	Rectal Smooth Muscle	rectum
44	chr7:137565000-137570200	Strong transcription	Colon Smooth Muscle	Colon
45	chr7:137565200-137567200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:137565200-137568000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr7:137565200-137568800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:137565200-137574200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:137565600-137570000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr7:137565800-137567200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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