Variant report
| Variant | rs6982024 |
|---|---|
| Chromosome Location | chr8:63202205-63202206 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs16928616 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs4506206 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs4534125 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56016708 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56064221 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56101514 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56108587 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56208025 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59311856 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60636518 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6415594 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6472003 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73683077 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73683078 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73683079 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73683081 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73683084 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73683086 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73683095 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7813487 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7828388 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7843617 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9693375 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019143 | chr8:63142202-63390820 | Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2757277 | chr8:63156123-63260182 | Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759621 | chr8:63156123-63260182 | Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63191000-63209200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
