Variant report

Variant	rs73683079
Chromosome Location	chr8:63189649-63189650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs16928616	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16928762	0.80[AFR][1000 genomes]
rs16928854	0.80[AFR][1000 genomes]
rs4506206	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4534125	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55838804	0.88[AFR][1000 genomes]
rs55856936	0.80[AFR][1000 genomes]
rs56016708	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56064221	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56101514	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56108587	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56208025	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58103991	0.88[AFR][1000 genomes]
rs59311856	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60636518	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6415594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472003	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472015	0.80[AFR][1000 genomes]
rs6982024	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6987976	0.80[AFR][1000 genomes]
rs6989864	0.80[AFR][1000 genomes]
rs7006148	0.80[AFR][1000 genomes]
rs7009557	0.80[AFR][1000 genomes]
rs73683077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683084	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683086	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684975	0.80[AFR][1000 genomes]
rs73684980	0.80[AFR][1000 genomes]
rs73684982	0.80[AFR][1000 genomes]
rs7813487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828333	0.80[AFR][1000 genomes]
rs7828388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7843617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9693375	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63163200-63190400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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