Variant report

Variant	rs7828333
Chromosome Location	chr8:63284050-63284051
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63280878..63284523-chr8:63286682..63289444,3	MCF-7	breast:

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10504349	1.00[EUR][1000 genomes]
rs10504350	1.00[EUR][1000 genomes]
rs1079159	1.00[EUR][1000 genomes]
rs1451847	1.00[EUR][1000 genomes]
rs1451852	1.00[EUR][1000 genomes]
rs16928616	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16928702	1.00[EUR][1000 genomes]
rs16928706	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16928714	1.00[EUR][1000 genomes]
rs16928716	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16928720	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16928724	0.81[AFR][1000 genomes]
rs16928729	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16928730	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16928762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928943	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928951	1.00[EUR][1000 genomes]
rs16928969	1.00[EUR][1000 genomes]
rs16929021	1.00[EUR][1000 genomes]
rs16929116	1.00[EUR][1000 genomes]
rs16929139	1.00[EUR][1000 genomes]
rs17840588	1.00[EUR][1000 genomes]
rs2351648	1.00[EUR][1000 genomes]
rs2351651	1.00[EUR][1000 genomes]
rs2351945	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2351946	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2351947	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2882808	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41362445	1.00[EUR][1000 genomes]
rs4282564	1.00[EUR][1000 genomes]
rs4478567	1.00[EUR][1000 genomes]
rs4506206	1.00[EUR][1000 genomes]
rs4531048	1.00[EUR][1000 genomes]
rs4534125	1.00[EUR][1000 genomes]
rs5014328	1.00[EUR][1000 genomes]
rs55737753	1.00[EUR][1000 genomes]
rs55774457	1.00[EUR][1000 genomes]
rs55838804	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55856936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55997675	1.00[EUR][1000 genomes]
rs56016708	1.00[EUR][1000 genomes]
rs56064221	1.00[EUR][1000 genomes]
rs56101514	1.00[EUR][1000 genomes]
rs56108587	1.00[EUR][1000 genomes]
rs56208025	1.00[EUR][1000 genomes]
rs56799220	1.00[EUR][1000 genomes]
rs57116440	1.00[EUR][1000 genomes]
rs57369766	1.00[EUR][1000 genomes]
rs57527933	1.00[EUR][1000 genomes]
rs57914735	1.00[EUR][1000 genomes]
rs58103991	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58977391	1.00[EUR][1000 genomes]
rs59017357	1.00[EUR][1000 genomes]
rs59311856	1.00[EUR][1000 genomes]
rs59718717	1.00[EUR][1000 genomes]
rs60095748	1.00[EUR][1000 genomes]
rs60303134	1.00[EUR][1000 genomes]
rs60512270	1.00[EUR][1000 genomes]
rs60636518	1.00[EUR][1000 genomes]
rs60718882	1.00[EUR][1000 genomes]
rs61299238	1.00[EUR][1000 genomes]
rs6415594	1.00[EUR][1000 genomes]
rs6472002	1.00[EUR][1000 genomes]
rs6472003	1.00[EUR][1000 genomes]
rs6472004	1.00[EUR][1000 genomes]
rs6472015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6983923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989333	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989805	1.00[EUR][1000 genomes]
rs6989864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6994406	1.00[EUR][1000 genomes]
rs6994555	1.00[EUR][1000 genomes]
rs7001011	1.00[EUR][1000 genomes]
rs7001806	1.00[EUR][1000 genomes]
rs7006148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7009557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016380	1.00[EUR][1000 genomes]
rs7016722	1.00[EUR][1000 genomes]
rs73683069	1.00[EUR][1000 genomes]
rs73683077	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73683078	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73683079	0.80[AFR][1000 genomes]
rs73683081	1.00[EUR][1000 genomes]
rs73683082	1.00[EUR][1000 genomes]
rs73683084	1.00[EUR][1000 genomes]
rs73683086	1.00[EUR][1000 genomes]
rs73683089	1.00[EUR][1000 genomes]
rs73683094	1.00[EUR][1000 genomes]
rs73683095	1.00[EUR][1000 genomes]
rs73683323	1.00[EUR][1000 genomes]
rs73683328	1.00[EUR][1000 genomes]
rs73683329	1.00[EUR][1000 genomes]
rs73684904	1.00[EUR][1000 genomes]
rs73684906	1.00[EUR][1000 genomes]
rs73684907	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684908	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684954	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684955	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684956	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684957	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684958	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684959	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684973	1.00[EUR][1000 genomes]
rs73684974	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684975	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684983	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812896	1.00[EUR][1000 genomes]
rs7813487	1.00[EUR][1000 genomes]
rs7813960	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7815526	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7819419	1.00[EUR][1000 genomes]
rs7819567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822422	1.00[EUR][1000 genomes]
rs7823670	1.00[EUR][1000 genomes]
rs7828388	1.00[EUR][1000 genomes]
rs7832309	1.00[EUR][1000 genomes]
rs7833412	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7833901	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7834312	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7837277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843375	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7843424	1.00[EUR][1000 genomes]
rs7843441	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7843588	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7843617	1.00[EUR][1000 genomes]
rs7844099	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7844501	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7845607	1.00[EUR][1000 genomes]
rs9693375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890957	chr8:63266645-63310921	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv982137	chr8:63277579-63399979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv890958	chr8:63278209-63327490	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63281800-63284200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr8:63282800-63284600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:63283000-63284400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:63283600-63286800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:63284000-63284800	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links