Variant report

Variant	rs73684986
Chromosome Location	chr8:63314006-63314007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10504349	1.00[EUR][1000 genomes]
rs10504350	1.00[EUR][1000 genomes]
rs10504352	1.00[EUR][1000 genomes]
rs1079159	1.00[EUR][1000 genomes]
rs1451847	1.00[EUR][1000 genomes]
rs1451852	1.00[EUR][1000 genomes]
rs16928616	1.00[EUR][1000 genomes]
rs16928702	1.00[EUR][1000 genomes]
rs16928706	1.00[EUR][1000 genomes]
rs16928714	1.00[EUR][1000 genomes]
rs16928716	1.00[EUR][1000 genomes]
rs16928720	1.00[EUR][1000 genomes]
rs16928729	1.00[EUR][1000 genomes]
rs16928730	1.00[EUR][1000 genomes]
rs16928762	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928854	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928943	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928951	1.00[EUR][1000 genomes]
rs16928969	1.00[EUR][1000 genomes]
rs16929021	1.00[EUR][1000 genomes]
rs16929116	1.00[EUR][1000 genomes]
rs16929139	1.00[EUR][1000 genomes]
rs17840588	1.00[EUR][1000 genomes]
rs2351648	1.00[EUR][1000 genomes]
rs2351651	1.00[EUR][1000 genomes]
rs2351945	1.00[EUR][1000 genomes]
rs2351946	1.00[EUR][1000 genomes]
rs2351947	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2882808	1.00[EUR][1000 genomes]
rs41362445	1.00[EUR][1000 genomes]
rs4282564	1.00[EUR][1000 genomes]
rs4478567	1.00[EUR][1000 genomes]
rs4506206	1.00[EUR][1000 genomes]
rs4531048	1.00[EUR][1000 genomes]
rs4534125	1.00[EUR][1000 genomes]
rs5014328	1.00[EUR][1000 genomes]
rs55737753	1.00[EUR][1000 genomes]
rs55774457	1.00[EUR][1000 genomes]
rs55838804	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55856936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55997675	1.00[EUR][1000 genomes]
rs56016708	1.00[EUR][1000 genomes]
rs56064221	1.00[EUR][1000 genomes]
rs56101514	1.00[EUR][1000 genomes]
rs56108587	1.00[EUR][1000 genomes]
rs56208025	1.00[EUR][1000 genomes]
rs56799220	1.00[EUR][1000 genomes]
rs57116440	1.00[EUR][1000 genomes]
rs57369766	1.00[EUR][1000 genomes]
rs57527933	1.00[EUR][1000 genomes]
rs57914735	1.00[EUR][1000 genomes]
rs58103991	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58977391	1.00[EUR][1000 genomes]
rs59017357	1.00[EUR][1000 genomes]
rs59311856	1.00[EUR][1000 genomes]
rs59718717	1.00[EUR][1000 genomes]
rs60095748	1.00[EUR][1000 genomes]
rs60303134	1.00[EUR][1000 genomes]
rs60512270	1.00[EUR][1000 genomes]
rs60636518	1.00[EUR][1000 genomes]
rs60718882	1.00[EUR][1000 genomes]
rs61299238	1.00[EUR][1000 genomes]
rs6415594	1.00[EUR][1000 genomes]
rs6472002	1.00[EUR][1000 genomes]
rs6472003	1.00[EUR][1000 genomes]
rs6472004	1.00[EUR][1000 genomes]
rs6472015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6983923	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989333	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989805	1.00[EUR][1000 genomes]
rs6989864	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6994406	1.00[EUR][1000 genomes]
rs6994555	1.00[EUR][1000 genomes]
rs7001011	1.00[EUR][1000 genomes]
rs7001806	1.00[EUR][1000 genomes]
rs7006148	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7009557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016380	1.00[EUR][1000 genomes]
rs7016722	1.00[EUR][1000 genomes]
rs73683069	1.00[EUR][1000 genomes]
rs73683077	1.00[EUR][1000 genomes]
rs73683078	1.00[EUR][1000 genomes]
rs73683081	1.00[EUR][1000 genomes]
rs73683082	1.00[EUR][1000 genomes]
rs73683084	1.00[EUR][1000 genomes]
rs73683086	1.00[EUR][1000 genomes]
rs73683089	1.00[EUR][1000 genomes]
rs73683094	1.00[EUR][1000 genomes]
rs73683095	1.00[EUR][1000 genomes]
rs73683323	1.00[EUR][1000 genomes]
rs73683328	1.00[EUR][1000 genomes]
rs73683329	1.00[EUR][1000 genomes]
rs73683336	1.00[EUR][1000 genomes]
rs73683337	1.00[EUR][1000 genomes]
rs73684904	1.00[EUR][1000 genomes]
rs73684906	1.00[EUR][1000 genomes]
rs73684907	1.00[EUR][1000 genomes]
rs73684908	1.00[EUR][1000 genomes]
rs73684954	1.00[EUR][1000 genomes]
rs73684955	1.00[EUR][1000 genomes]
rs73684956	1.00[EUR][1000 genomes]
rs73684957	1.00[EUR][1000 genomes]
rs73684958	1.00[EUR][1000 genomes]
rs73684959	1.00[EUR][1000 genomes]
rs73684973	1.00[EUR][1000 genomes]
rs73684974	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684975	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812896	1.00[EUR][1000 genomes]
rs7813487	1.00[EUR][1000 genomes]
rs7813960	1.00[EUR][1000 genomes]
rs7815526	1.00[EUR][1000 genomes]
rs7819419	1.00[EUR][1000 genomes]
rs7819567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822422	1.00[EUR][1000 genomes]
rs7823670	1.00[EUR][1000 genomes]
rs7828333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7828388	1.00[EUR][1000 genomes]
rs7832309	1.00[EUR][1000 genomes]
rs7833412	1.00[EUR][1000 genomes]
rs7833901	1.00[EUR][1000 genomes]
rs7834312	1.00[EUR][1000 genomes]
rs7837277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843375	1.00[EUR][1000 genomes]
rs7843424	1.00[EUR][1000 genomes]
rs7843441	1.00[EUR][1000 genomes]
rs7843588	1.00[EUR][1000 genomes]
rs7843617	1.00[EUR][1000 genomes]
rs7844099	1.00[EUR][1000 genomes]
rs7844501	1.00[EUR][1000 genomes]
rs7845607	1.00[EUR][1000 genomes]
rs9693375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv982137	chr8:63277579-63399979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890958	chr8:63278209-63327490	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63312600-63314200	Weak transcription	NH-A	brain
2	chr8:63313200-63314400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:63314000-63316400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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