Variant report

Variant	rs7843588
Chromosome Location	chr8:63255788-63255789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10504349	1.00[EUR][1000 genomes]
rs10504350	1.00[EUR][1000 genomes]
rs1079159	1.00[EUR][1000 genomes]
rs1451847	1.00[EUR][1000 genomes]
rs1451852	1.00[EUR][1000 genomes]
rs16928616	1.00[EUR][1000 genomes]
rs16928702	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928714	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928762	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16928854	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16928943	1.00[EUR][1000 genomes]
rs16928951	1.00[EUR][1000 genomes]
rs16928969	1.00[EUR][1000 genomes]
rs16929021	1.00[EUR][1000 genomes]
rs16929116	1.00[EUR][1000 genomes]
rs17840588	1.00[EUR][1000 genomes]
rs2351648	1.00[EUR][1000 genomes]
rs2351651	1.00[EUR][1000 genomes]
rs2351945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2351946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2351947	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2882808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4282564	1.00[EUR][1000 genomes]
rs4478567	1.00[EUR][1000 genomes]
rs4506206	1.00[EUR][1000 genomes]
rs4531048	1.00[EUR][1000 genomes]
rs4534125	1.00[EUR][1000 genomes]
rs5014328	1.00[EUR][1000 genomes]
rs55737753	1.00[EUR][1000 genomes]
rs55774457	1.00[EUR][1000 genomes]
rs55838804	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55856936	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55997675	1.00[EUR][1000 genomes]
rs56016708	1.00[EUR][1000 genomes]
rs56064221	1.00[EUR][1000 genomes]
rs56101514	1.00[EUR][1000 genomes]
rs56108587	1.00[EUR][1000 genomes]
rs56208025	1.00[EUR][1000 genomes]
rs56799220	1.00[EUR][1000 genomes]
rs57116440	1.00[EUR][1000 genomes]
rs57369766	1.00[EUR][1000 genomes]
rs57527933	1.00[EUR][1000 genomes]
rs57914735	1.00[EUR][1000 genomes]
rs58103991	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59017357	1.00[EUR][1000 genomes]
rs59311856	1.00[EUR][1000 genomes]
rs59718717	1.00[EUR][1000 genomes]
rs60095748	1.00[EUR][1000 genomes]
rs60303134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60512270	1.00[EUR][1000 genomes]
rs60636518	1.00[EUR][1000 genomes]
rs60718882	1.00[EUR][1000 genomes]
rs6415594	1.00[EUR][1000 genomes]
rs6472002	1.00[EUR][1000 genomes]
rs6472003	1.00[EUR][1000 genomes]
rs6472004	1.00[EUR][1000 genomes]
rs6472015	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6983923	1.00[EUR][1000 genomes]
rs6987976	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6989333	1.00[EUR][1000 genomes]
rs6989805	1.00[EUR][1000 genomes]
rs6989864	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6994406	1.00[EUR][1000 genomes]
rs6994555	1.00[EUR][1000 genomes]
rs7001011	1.00[EUR][1000 genomes]
rs7001806	1.00[EUR][1000 genomes]
rs7006148	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7009557	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7016722	1.00[EUR][1000 genomes]
rs73683069	1.00[EUR][1000 genomes]
rs73683077	1.00[EUR][1000 genomes]
rs73683078	1.00[EUR][1000 genomes]
rs73683081	1.00[EUR][1000 genomes]
rs73683082	1.00[EUR][1000 genomes]
rs73683084	1.00[EUR][1000 genomes]
rs73683086	1.00[EUR][1000 genomes]
rs73683089	1.00[EUR][1000 genomes]
rs73683094	1.00[EUR][1000 genomes]
rs73683095	1.00[EUR][1000 genomes]
rs73683323	1.00[EUR][1000 genomes]
rs73683328	1.00[EUR][1000 genomes]
rs73684904	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684974	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684975	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684980	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684982	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73684983	1.00[EUR][1000 genomes]
rs73684986	1.00[EUR][1000 genomes]
rs7812896	1.00[EUR][1000 genomes]
rs7813487	1.00[EUR][1000 genomes]
rs7813960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7819419	1.00[EUR][1000 genomes]
rs7819567	1.00[EUR][1000 genomes]
rs7822422	1.00[EUR][1000 genomes]
rs7823670	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7828333	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7828388	1.00[EUR][1000 genomes]
rs7832309	1.00[EUR][1000 genomes]
rs7833412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7837277	1.00[EUR][1000 genomes]
rs7843375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843424	1.00[EUR][1000 genomes]
rs7843441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843617	1.00[EUR][1000 genomes]
rs7844099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845607	1.00[EUR][1000 genomes]
rs9693375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv6225	chr8:63214240-63262285	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63252800-63255800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:63254000-63256200	Enhancers	Brain Germinal Matrix	brain
3	chr8:63255600-63256600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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