Variant report

Variant	rs16928724
Chromosome Location	chr8:63253598-63253599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs16928702	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928714	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928762	0.81[AFR][1000 genomes]
rs16928854	0.81[AFR][1000 genomes]
rs2351945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2351946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2351947	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2882808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55838804	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55856936	0.81[AFR][1000 genomes]
rs58103991	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60303134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472015	0.81[AFR][1000 genomes]
rs6987976	0.81[AFR][1000 genomes]
rs6989864	0.81[AFR][1000 genomes]
rs7006148	0.81[AFR][1000 genomes]
rs7009557	0.81[AFR][1000 genomes]
rs73684904	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684974	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684975	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684980	0.81[AFR][1000 genomes]
rs73684982	0.81[AFR][1000 genomes]
rs7813960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7815526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823670	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828333	0.81[AFR][1000 genomes]
rs7833412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7833901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7843375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7843441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7843588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7844099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7844501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv6225	chr8:63214240-63262285	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63252800-63253600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr8:63252800-63253800	Enhancers	Fetal Intestine Large	intestine
3	chr8:63252800-63255800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:63253200-63255600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:63253400-63253800	Weak transcription	A549	lung
6	chr8:63253400-63254400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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