Variant report

Variant	rs73684974
Chromosome Location	chr8:63267741-63267742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs16928702	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928706	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928714	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928716	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928720	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928724	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928729	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928730	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928762	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16928854	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2351945	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2351946	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2351947	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2882808	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55838804	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55856936	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58103991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60303134	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6472015	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6983923	0.87[AMR][1000 genomes]
rs6987976	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6989864	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6995937	1.00[EUR][1000 genomes]
rs7006148	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7009557	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684904	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684906	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684907	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684908	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684954	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684955	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684956	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684957	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684958	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684959	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684973	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684975	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684980	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684982	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73684983	0.87[AMR][1000 genomes]
rs73684986	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7812896	0.85[AMR][1000 genomes]
rs7813960	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7815526	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7819567	0.87[AMR][1000 genomes]
rs7823670	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7828333	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7833412	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7833901	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7834312	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7837277	0.87[AMR][1000 genomes]
rs7843375	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7843441	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7843588	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7844099	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7844501	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890957	chr8:63266645-63310921	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63267200-63267800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links