Variant report

Variant	rs10504349
Chromosome Location	chr8:63391845-63391846
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10504350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504352	1.00[EUR][1000 genomes]
rs10504353	1.00[EUR][1000 genomes]
rs1079159	1.00[EUR][1000 genomes]
rs1451847	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1451852	1.00[EUR][1000 genomes]
rs1480187	1.00[EUR][1000 genomes]
rs1480188	1.00[EUR][1000 genomes]
rs16928702	1.00[EUR][1000 genomes]
rs16928706	1.00[EUR][1000 genomes]
rs16928714	1.00[EUR][1000 genomes]
rs16928716	1.00[EUR][1000 genomes]
rs16928720	1.00[EUR][1000 genomes]
rs16928729	1.00[EUR][1000 genomes]
rs16928730	1.00[EUR][1000 genomes]
rs16928762	1.00[EUR][1000 genomes]
rs16928854	1.00[EUR][1000 genomes]
rs16928943	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928951	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928969	1.00[EUR][1000 genomes]
rs16929021	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929116	1.00[EUR][1000 genomes]
rs16929139	1.00[EUR][1000 genomes]
rs17840588	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2351651	1.00[EUR][1000 genomes]
rs2351945	1.00[EUR][1000 genomes]
rs2351946	1.00[EUR][1000 genomes]
rs2351947	1.00[EUR][1000 genomes]
rs2882808	1.00[EUR][1000 genomes]
rs41362445	1.00[EUR][1000 genomes]
rs4282564	1.00[EUR][1000 genomes]
rs4506206	1.00[EUR][1000 genomes]
rs4531048	1.00[EUR][1000 genomes]
rs4534125	1.00[EUR][1000 genomes]
rs5014328	1.00[EUR][1000 genomes]
rs55774457	1.00[EUR][1000 genomes]
rs55838804	1.00[EUR][1000 genomes]
rs55856936	1.00[EUR][1000 genomes]
rs56016708	1.00[EUR][1000 genomes]
rs56064221	1.00[EUR][1000 genomes]
rs56101514	1.00[EUR][1000 genomes]
rs56108587	1.00[EUR][1000 genomes]
rs57116440	1.00[EUR][1000 genomes]
rs57369766	1.00[EUR][1000 genomes]
rs57527933	1.00[EUR][1000 genomes]
rs57914735	1.00[EUR][1000 genomes]
rs58103991	1.00[EUR][1000 genomes]
rs58977391	1.00[EUR][1000 genomes]
rs59017357	1.00[EUR][1000 genomes]
rs59086112	1.00[EUR][1000 genomes]
rs59718717	1.00[EUR][1000 genomes]
rs60303134	1.00[EUR][1000 genomes]
rs60512270	1.00[EUR][1000 genomes]
rs60636518	1.00[EUR][1000 genomes]
rs61299238	1.00[EUR][1000 genomes]
rs6415594	1.00[EUR][1000 genomes]
rs6472002	1.00[EUR][1000 genomes]
rs6472003	1.00[EUR][1000 genomes]
rs6472004	1.00[EUR][1000 genomes]
rs6472015	1.00[EUR][1000 genomes]
rs6983923	1.00[EUR][1000 genomes]
rs6987976	1.00[EUR][1000 genomes]
rs6989333	1.00[EUR][1000 genomes]
rs6989805	1.00[EUR][1000 genomes]
rs6989864	1.00[EUR][1000 genomes]
rs6994406	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6994555	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6995937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001011	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7001806	1.00[EUR][1000 genomes]
rs7006148	1.00[EUR][1000 genomes]
rs7009557	1.00[EUR][1000 genomes]
rs7016380	1.00[EUR][1000 genomes]
rs7016722	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683084	1.00[EUR][1000 genomes]
rs73683086	1.00[EUR][1000 genomes]
rs73683089	1.00[EUR][1000 genomes]
rs73683094	1.00[EUR][1000 genomes]
rs73683095	1.00[EUR][1000 genomes]
rs73683323	1.00[EUR][1000 genomes]
rs73683328	1.00[EUR][1000 genomes]
rs73683329	1.00[EUR][1000 genomes]
rs73683336	1.00[EUR][1000 genomes]
rs73683337	1.00[EUR][1000 genomes]
rs73684904	1.00[EUR][1000 genomes]
rs73684906	1.00[EUR][1000 genomes]
rs73684907	1.00[EUR][1000 genomes]
rs73684908	1.00[EUR][1000 genomes]
rs73684954	1.00[EUR][1000 genomes]
rs73684955	1.00[EUR][1000 genomes]
rs73684956	1.00[EUR][1000 genomes]
rs73684957	1.00[EUR][1000 genomes]
rs73684958	1.00[EUR][1000 genomes]
rs73684959	1.00[EUR][1000 genomes]
rs73684973	1.00[EUR][1000 genomes]
rs73684975	1.00[EUR][1000 genomes]
rs73684980	1.00[EUR][1000 genomes]
rs73684982	1.00[EUR][1000 genomes]
rs73684983	1.00[EUR][1000 genomes]
rs73684986	1.00[EUR][1000 genomes]
rs7812896	1.00[EUR][1000 genomes]
rs7813960	1.00[EUR][1000 genomes]
rs7815526	1.00[EUR][1000 genomes]
rs7817187	1.00[EUR][1000 genomes]
rs7819419	1.00[EUR][1000 genomes]
rs7819567	1.00[EUR][1000 genomes]
rs7822422	1.00[EUR][1000 genomes]
rs7822961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823670	1.00[EUR][1000 genomes]
rs7828333	1.00[EUR][1000 genomes]
rs7828388	1.00[EUR][1000 genomes]
rs7833412	1.00[EUR][1000 genomes]
rs7833901	1.00[EUR][1000 genomes]
rs7834312	1.00[EUR][1000 genomes]
rs7837277	1.00[EUR][1000 genomes]
rs7843375	1.00[EUR][1000 genomes]
rs7843441	1.00[EUR][1000 genomes]
rs7843588	1.00[EUR][1000 genomes]
rs7844099	1.00[EUR][1000 genomes]
rs7844501	1.00[EUR][1000 genomes]
rs7845607	1.00[EUR][1000 genomes]
rs9693375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv982137	chr8:63277579-63399979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63390000-63399600	Weak transcription	Brain Germinal Matrix	brain
2	chr8:63390200-63395000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:63391200-63392200	Enhancers	Fetal Intestine Small	intestine
4	chr8:63391400-63392400	Enhancers	Fetal Intestine Large	intestine

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