Variant report

Variant	rs16929139
Chromosome Location	chr8:63459618-63459619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10504349	1.00[EUR][1000 genomes]
rs10504350	1.00[EUR][1000 genomes]
rs10504352	1.00[EUR][1000 genomes]
rs10504353	1.00[EUR][1000 genomes]
rs1079159	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13268135	0.86[AFR][1000 genomes]
rs1451847	1.00[EUR][1000 genomes]
rs1451852	1.00[EUR][1000 genomes]
rs1480123	1.00[EUR][1000 genomes]
rs1480187	1.00[EUR][1000 genomes]
rs1480188	1.00[EUR][1000 genomes]
rs16928762	1.00[EUR][1000 genomes]
rs16928854	1.00[EUR][1000 genomes]
rs16928943	1.00[EUR][1000 genomes]
rs16928951	1.00[EUR][1000 genomes]
rs16928969	1.00[EUR][1000 genomes]
rs16929021	1.00[EUR][1000 genomes]
rs16929116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17840588	1.00[EUR][1000 genomes]
rs2035303	1.00[EUR][1000 genomes]
rs28804670	1.00[EUR][1000 genomes]
rs35029520	0.86[AFR][1000 genomes]
rs41362445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55774457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55856936	1.00[EUR][1000 genomes]
rs57914735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58977391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59086112	1.00[EUR][1000 genomes]
rs59181770	1.00[EUR][1000 genomes]
rs61299238	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472015	1.00[EUR][1000 genomes]
rs6983923	1.00[EUR][1000 genomes]
rs6987976	1.00[EUR][1000 genomes]
rs6989333	1.00[EUR][1000 genomes]
rs6989864	1.00[EUR][1000 genomes]
rs6994406	1.00[EUR][1000 genomes]
rs6994555	1.00[EUR][1000 genomes]
rs7001011	1.00[EUR][1000 genomes]
rs7004299	1.00[EUR][1000 genomes]
rs7006148	1.00[EUR][1000 genomes]
rs7009557	1.00[EUR][1000 genomes]
rs7016380	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016722	1.00[EUR][1000 genomes]
rs7017552	1.00[EUR][1000 genomes]
rs73683323	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683336	1.00[EUR][1000 genomes]
rs73683337	1.00[EUR][1000 genomes]
rs73684973	1.00[EUR][1000 genomes]
rs73684975	1.00[EUR][1000 genomes]
rs73684980	1.00[EUR][1000 genomes]
rs73684982	1.00[EUR][1000 genomes]
rs73684983	1.00[EUR][1000 genomes]
rs73684986	1.00[EUR][1000 genomes]
rs7812508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7812896	1.00[EUR][1000 genomes]
rs7816460	1.00[EUR][1000 genomes]
rs7817187	1.00[EUR][1000 genomes]
rs7819419	1.00[EUR][1000 genomes]
rs7819567	1.00[EUR][1000 genomes]
rs7825429	1.00[EUR][1000 genomes]
rs7828333	1.00[EUR][1000 genomes]
rs7837277	1.00[EUR][1000 genomes]
rs7839654	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2761431	chr8:63458672-63467199	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63458200-63459800	Enhancers	Fetal Brain Female	brain
2	chr8:63458600-63460200	Enhancers	Fetal Brain Male	brain
3	chr8:63458800-63460400	Enhancers	Brain Germinal Matrix	brain
4	chr8:63459200-63462800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:63459600-63459800	Enhancers	Colon Smooth Muscle	Colon

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