Variant report

Variant	rs7816460
Chromosome Location	chr8:63624777-63624778
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10504352	1.00[EUR][1000 genomes]
rs10504353	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1079159	1.00[EUR][1000 genomes]
rs1351350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1480117	1.00[EUR][1000 genomes]
rs1480123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1480187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1480188	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929116	1.00[EUR][1000 genomes]
rs16929139	1.00[EUR][1000 genomes]
rs2035303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28804670	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41362445	1.00[EUR][1000 genomes]
rs55774457	1.00[EUR][1000 genomes]
rs57914735	1.00[EUR][1000 genomes]
rs58977391	1.00[EUR][1000 genomes]
rs59086112	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59181770	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61299238	1.00[EUR][1000 genomes]
rs6986007	1.00[EUR][1000 genomes]
rs6994406	1.00[EUR][1000 genomes]
rs7000089	1.00[EUR][1000 genomes]
rs7004299	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016380	1.00[EUR][1000 genomes]
rs7016722	1.00[EUR][1000 genomes]
rs7017552	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683323	1.00[EUR][1000 genomes]
rs73683328	1.00[EUR][1000 genomes]
rs73683329	1.00[EUR][1000 genomes]
rs73683336	1.00[EUR][1000 genomes]
rs73683337	1.00[EUR][1000 genomes]
rs7817187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823443	1.00[EUR][1000 genomes]
rs7825429	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7837139	0.83[AMR][1000 genomes]
rs7837948	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63624600-63625400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr8:63624600-63625600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:63624600-63625800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:63624600-63625800	Enhancers	Stomach Mucosa	stomach

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