Variant report
| Variant | rs1480123 |
|---|---|
| Chromosome Location | chr8:63654975-63654976 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10504352 | 1.00[EUR][1000 genomes] |
| rs10504353 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1351350 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1455577 | 1.00[EUR][1000 genomes] |
| rs1480117 | 1.00[EUR][1000 genomes] |
| rs1480187 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1480188 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16929139 | 1.00[EUR][1000 genomes] |
| rs2035303 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28804670 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41362445 | 1.00[EUR][1000 genomes] |
| rs59086112 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59181770 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61299238 | 1.00[EUR][1000 genomes] |
| rs6986007 | 1.00[EUR][1000 genomes] |
| rs7000089 | 1.00[EUR][1000 genomes] |
| rs7004299 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7017552 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73683329 | 1.00[EUR][1000 genomes] |
| rs73683336 | 1.00[EUR][1000 genomes] |
| rs73683337 | 1.00[EUR][1000 genomes] |
| rs7816460 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7817187 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7823443 | 1.00[EUR][1000 genomes] |
| rs7825429 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7831801 | 1.00[EUR][1000 genomes] |
| rs7837139 | 0.83[AMR][1000 genomes] |
| rs7837948 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831340 | chr8:63515126-63702660 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63649200-63660200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
