Variant report

Variant	rs7017552
Chromosome Location	chr8:63602770-63602771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10504352	1.00[EUR][1000 genomes]
rs10504353	1.00[EUR][1000 genomes]
rs1079159	1.00[EUR][1000 genomes]
rs1351350	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1451847	1.00[EUR][1000 genomes]
rs1480117	1.00[EUR][1000 genomes]
rs1480123	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1480187	1.00[EUR][1000 genomes]
rs1480188	1.00[EUR][1000 genomes]
rs16929116	1.00[EUR][1000 genomes]
rs16929139	1.00[EUR][1000 genomes]
rs2035303	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28804670	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41362445	1.00[EUR][1000 genomes]
rs55774457	1.00[EUR][1000 genomes]
rs57914735	1.00[EUR][1000 genomes]
rs58977391	1.00[EUR][1000 genomes]
rs59086112	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59181770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61299238	1.00[EUR][1000 genomes]
rs6994406	1.00[EUR][1000 genomes]
rs7000089	1.00[EUR][1000 genomes]
rs7004299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016380	1.00[EUR][1000 genomes]
rs7016722	1.00[EUR][1000 genomes]
rs73683323	1.00[EUR][1000 genomes]
rs73683328	1.00[EUR][1000 genomes]
rs73683329	1.00[EUR][1000 genomes]
rs73683336	1.00[EUR][1000 genomes]
rs73683337	1.00[EUR][1000 genomes]
rs7812896	1.00[EUR][1000 genomes]
rs7816460	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7817187	1.00[EUR][1000 genomes]
rs7823443	1.00[EUR][1000 genomes]
rs7825429	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7837948	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63602600-63602800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:63602600-63602800	Active TSS	Brain Cingulate Gyrus	brain
3	chr8:63602600-63602800	Enhancers	Brain Substantia Nigra	brain
4	chr8:63602600-63602800	Enhancers	Fetal Brain Male	brain
5	chr8:63602600-63602800	Enhancers	Fetal Brain Female	brain
6	chr8:63602600-63602800	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr8:63602600-63603000	Flanking Active TSS	Fetal Muscle Trunk	muscle
8	chr8:63602600-63603000	Enhancers	Fetal Stomach	stomach
9	chr8:63602600-63603000	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr8:63602600-63603200	Active TSS	Brain Germinal Matrix	brain
11	chr8:63602600-63603200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:63602600-63603200	Active TSS	HSMM	muscle
13	chr8:63602600-63603400	Flanking Active TSS	Fetal Muscle Leg	muscle
14	chr8:63602600-63603600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:63602600-63603600	Active TSS	Brain Angular Gyrus	brain
16	chr8:63602600-63603600	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr8:63602600-63603800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:63602600-63603800	Active TSS	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links