Variant report

Variant	rs1079159
Chromosome Location	chr8:63436450-63436451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10504349	1.00[EUR][1000 genomes]
rs10504350	1.00[EUR][1000 genomes]
rs10504352	1.00[EUR][1000 genomes]
rs10504353	1.00[EUR][1000 genomes]
rs1451847	1.00[EUR][1000 genomes]
rs1451852	1.00[EUR][1000 genomes]
rs1480187	1.00[EUR][1000 genomes]
rs1480188	1.00[EUR][1000 genomes]
rs16928702	1.00[EUR][1000 genomes]
rs16928706	1.00[EUR][1000 genomes]
rs16928714	1.00[EUR][1000 genomes]
rs16928716	1.00[EUR][1000 genomes]
rs16928720	1.00[EUR][1000 genomes]
rs16928729	1.00[EUR][1000 genomes]
rs16928730	1.00[EUR][1000 genomes]
rs16928762	1.00[EUR][1000 genomes]
rs16928854	1.00[EUR][1000 genomes]
rs16928943	1.00[EUR][1000 genomes]
rs16928951	1.00[EUR][1000 genomes]
rs16928969	1.00[EUR][1000 genomes]
rs16929021	1.00[EUR][1000 genomes]
rs16929116	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17840588	1.00[EUR][1000 genomes]
rs2035303	1.00[EUR][1000 genomes]
rs2351945	1.00[EUR][1000 genomes]
rs2351946	1.00[EUR][1000 genomes]
rs2351947	1.00[EUR][1000 genomes]
rs2882808	1.00[EUR][1000 genomes]
rs41362445	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55774457	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55838804	1.00[EUR][1000 genomes]
rs55856936	1.00[EUR][1000 genomes]
rs57914735	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58103991	1.00[EUR][1000 genomes]
rs58977391	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59086112	1.00[EUR][1000 genomes]
rs59181770	1.00[EUR][1000 genomes]
rs60303134	1.00[EUR][1000 genomes]
rs61299238	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472015	1.00[EUR][1000 genomes]
rs6983923	1.00[EUR][1000 genomes]
rs6987976	1.00[EUR][1000 genomes]
rs6989333	1.00[EUR][1000 genomes]
rs6989864	1.00[EUR][1000 genomes]
rs6994406	1.00[EUR][1000 genomes]
rs6994555	1.00[EUR][1000 genomes]
rs7001011	1.00[EUR][1000 genomes]
rs7004299	1.00[EUR][1000 genomes]
rs7006148	1.00[EUR][1000 genomes]
rs7009557	1.00[EUR][1000 genomes]
rs7016380	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016722	1.00[EUR][1000 genomes]
rs7017552	1.00[EUR][1000 genomes]
rs73683323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683328	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683329	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683336	1.00[EUR][1000 genomes]
rs73683337	1.00[EUR][1000 genomes]
rs73684904	1.00[EUR][1000 genomes]
rs73684906	1.00[EUR][1000 genomes]
rs73684907	1.00[EUR][1000 genomes]
rs73684908	1.00[EUR][1000 genomes]
rs73684954	1.00[EUR][1000 genomes]
rs73684955	1.00[EUR][1000 genomes]
rs73684956	1.00[EUR][1000 genomes]
rs73684957	1.00[EUR][1000 genomes]
rs73684958	1.00[EUR][1000 genomes]
rs73684959	1.00[EUR][1000 genomes]
rs73684973	1.00[EUR][1000 genomes]
rs73684975	1.00[EUR][1000 genomes]
rs73684980	1.00[EUR][1000 genomes]
rs73684982	1.00[EUR][1000 genomes]
rs73684983	1.00[EUR][1000 genomes]
rs73684986	1.00[EUR][1000 genomes]
rs7812508	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7812896	1.00[EUR][1000 genomes]
rs7813960	1.00[EUR][1000 genomes]
rs7815526	1.00[EUR][1000 genomes]
rs7816460	1.00[EUR][1000 genomes]
rs7817187	1.00[EUR][1000 genomes]
rs7819419	1.00[EUR][1000 genomes]
rs7819567	1.00[EUR][1000 genomes]
rs7823670	1.00[EUR][1000 genomes]
rs7828333	1.00[EUR][1000 genomes]
rs7833412	1.00[EUR][1000 genomes]
rs7833901	1.00[EUR][1000 genomes]
rs7834312	1.00[EUR][1000 genomes]
rs7837277	1.00[EUR][1000 genomes]
rs7843375	1.00[EUR][1000 genomes]
rs7843441	1.00[EUR][1000 genomes]
rs7843588	1.00[EUR][1000 genomes]
rs7844099	1.00[EUR][1000 genomes]
rs7844501	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63428800-63443600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63432000-63437200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:63433800-63437400	Enhancers	Fetal Intestine Large	intestine
4	chr8:63434200-63436600	Enhancers	Fetal Intestine Small	intestine
5	chr8:63435600-63436600	Enhancers	Liver	Liver
6	chr8:63435600-63436600	Enhancers	Stomach Mucosa	stomach
7	chr8:63435800-63436600	Enhancers	HepG2	liver
8	chr8:63436200-63436600	Enhancers	Pancreas	Pancrea
9	chr8:63436400-63442000	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links