Variant report

Variant	rs16929116
Chromosome Location	chr8:63447127-63447128
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10504349	1.00[EUR][1000 genomes]
rs10504350	1.00[EUR][1000 genomes]
rs10504352	1.00[EUR][1000 genomes]
rs10504353	1.00[EUR][1000 genomes]
rs1079159	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13268135	0.84[AFR][1000 genomes]
rs1451847	1.00[EUR][1000 genomes]
rs1451852	1.00[EUR][1000 genomes]
rs1480187	1.00[EUR][1000 genomes]
rs1480188	1.00[EUR][1000 genomes]
rs16928716	1.00[EUR][1000 genomes]
rs16928720	1.00[EUR][1000 genomes]
rs16928729	1.00[EUR][1000 genomes]
rs16928730	1.00[EUR][1000 genomes]
rs16928762	1.00[EUR][1000 genomes]
rs16928854	1.00[EUR][1000 genomes]
rs16928943	1.00[EUR][1000 genomes]
rs16928951	1.00[EUR][1000 genomes]
rs16928969	1.00[EUR][1000 genomes]
rs16929021	1.00[EUR][1000 genomes]
rs16929139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17840588	1.00[EUR][1000 genomes]
rs2035303	1.00[EUR][1000 genomes]
rs35029520	0.84[AFR][1000 genomes]
rs41362445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55774457	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55856936	1.00[EUR][1000 genomes]
rs57914735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58977391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59086112	1.00[EUR][1000 genomes]
rs59181770	1.00[EUR][1000 genomes]
rs61299238	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472015	1.00[EUR][1000 genomes]
rs6983923	1.00[EUR][1000 genomes]
rs6987976	1.00[EUR][1000 genomes]
rs6989333	1.00[EUR][1000 genomes]
rs6989864	1.00[EUR][1000 genomes]
rs6994406	1.00[EUR][1000 genomes]
rs6994555	1.00[EUR][1000 genomes]
rs7001011	1.00[EUR][1000 genomes]
rs7004299	1.00[EUR][1000 genomes]
rs7006148	1.00[EUR][1000 genomes]
rs7009557	1.00[EUR][1000 genomes]
rs7016380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016722	1.00[EUR][1000 genomes]
rs7017552	1.00[EUR][1000 genomes]
rs73683323	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683336	1.00[EUR][1000 genomes]
rs73683337	1.00[EUR][1000 genomes]
rs73684955	1.00[EUR][1000 genomes]
rs73684956	1.00[EUR][1000 genomes]
rs73684957	1.00[EUR][1000 genomes]
rs73684958	1.00[EUR][1000 genomes]
rs73684959	1.00[EUR][1000 genomes]
rs73684973	1.00[EUR][1000 genomes]
rs73684975	1.00[EUR][1000 genomes]
rs73684980	1.00[EUR][1000 genomes]
rs73684982	1.00[EUR][1000 genomes]
rs73684983	1.00[EUR][1000 genomes]
rs73684986	1.00[EUR][1000 genomes]
rs7812508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7812896	1.00[EUR][1000 genomes]
rs7813960	1.00[EUR][1000 genomes]
rs7816460	1.00[EUR][1000 genomes]
rs7817187	1.00[EUR][1000 genomes]
rs7819419	1.00[EUR][1000 genomes]
rs7819567	1.00[EUR][1000 genomes]
rs7825429	1.00[EUR][1000 genomes]
rs7828333	1.00[EUR][1000 genomes]
rs7833901	1.00[EUR][1000 genomes]
rs7834312	1.00[EUR][1000 genomes]
rs7837277	1.00[EUR][1000 genomes]
rs7839654	0.84[AFR][1000 genomes]
rs7843375	1.00[EUR][1000 genomes]
rs7843441	1.00[EUR][1000 genomes]
rs7843588	1.00[EUR][1000 genomes]
rs7844099	1.00[EUR][1000 genomes]
rs7844501	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63443200-63448200	Weak transcription	Fetal Intestine Large	intestine
2	chr8:63444600-63449400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:63444800-63458200	Weak transcription	Fetal Brain Female	brain
4	chr8:63446000-63447200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:63446200-63450400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:63446600-63447200	Enhancers	Fetal Brain Male	brain
7	chr8:63447000-63447400	Weak transcription	Brain Germinal Matrix	brain

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