Variant report

Variant	rs56799220
Chromosome Location	chr8:63199506-63199507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1451852	1.00[EUR][1000 genomes]
rs16928616	1.00[EUR][1000 genomes]
rs16928702	1.00[EUR][1000 genomes]
rs16928706	1.00[EUR][1000 genomes]
rs16928714	1.00[EUR][1000 genomes]
rs16928716	1.00[EUR][1000 genomes]
rs16928720	1.00[EUR][1000 genomes]
rs16928729	1.00[EUR][1000 genomes]
rs16928730	1.00[EUR][1000 genomes]
rs16928762	1.00[EUR][1000 genomes]
rs16928854	1.00[EUR][1000 genomes]
rs16928943	1.00[EUR][1000 genomes]
rs16928951	1.00[EUR][1000 genomes]
rs16928969	1.00[EUR][1000 genomes]
rs17840588	1.00[EUR][1000 genomes]
rs2351648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2351651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2351945	1.00[EUR][1000 genomes]
rs2351946	1.00[EUR][1000 genomes]
rs2351947	1.00[EUR][1000 genomes]
rs2882808	1.00[EUR][1000 genomes]
rs4282564	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4506206	1.00[EUR][1000 genomes]
rs4531048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4534125	1.00[EUR][1000 genomes]
rs5014328	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55737753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55838804	1.00[EUR][1000 genomes]
rs55856936	1.00[EUR][1000 genomes]
rs55997675	1.00[EUR][1000 genomes]
rs56016708	1.00[EUR][1000 genomes]
rs56064221	1.00[EUR][1000 genomes]
rs56101514	1.00[EUR][1000 genomes]
rs56108587	1.00[EUR][1000 genomes]
rs56208025	1.00[EUR][1000 genomes]
rs57116440	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57369766	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57527933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58103991	1.00[EUR][1000 genomes]
rs59017357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59311856	1.00[EUR][1000 genomes]
rs59718717	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60095748	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60303134	1.00[EUR][1000 genomes]
rs60512270	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60636518	1.00[EUR][1000 genomes]
rs60718882	1.00[EUR][1000 genomes]
rs6415594	1.00[EUR][1000 genomes]
rs6472002	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472003	1.00[EUR][1000 genomes]
rs6472004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472015	1.00[EUR][1000 genomes]
rs6981330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6983923	1.00[EUR][1000 genomes]
rs6987976	1.00[EUR][1000 genomes]
rs6989333	1.00[EUR][1000 genomes]
rs6989805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989864	1.00[EUR][1000 genomes]
rs7001806	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7002104	0.85[AMR][1000 genomes]
rs7002109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006148	1.00[EUR][1000 genomes]
rs7009557	1.00[EUR][1000 genomes]
rs73683069	1.00[EUR][1000 genomes]
rs73683077	1.00[EUR][1000 genomes]
rs73683078	1.00[EUR][1000 genomes]
rs73683081	1.00[EUR][1000 genomes]
rs73683082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683084	1.00[EUR][1000 genomes]
rs73683086	1.00[EUR][1000 genomes]
rs73683088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683094	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683095	1.00[EUR][1000 genomes]
rs73684904	1.00[EUR][1000 genomes]
rs73684906	1.00[EUR][1000 genomes]
rs73684907	1.00[EUR][1000 genomes]
rs73684908	1.00[EUR][1000 genomes]
rs73684954	1.00[EUR][1000 genomes]
rs73684955	1.00[EUR][1000 genomes]
rs73684956	1.00[EUR][1000 genomes]
rs73684957	1.00[EUR][1000 genomes]
rs73684958	1.00[EUR][1000 genomes]
rs73684959	1.00[EUR][1000 genomes]
rs73684973	1.00[EUR][1000 genomes]
rs73684975	1.00[EUR][1000 genomes]
rs73684980	1.00[EUR][1000 genomes]
rs73684982	1.00[EUR][1000 genomes]
rs73684983	1.00[EUR][1000 genomes]
rs73684986	1.00[EUR][1000 genomes]
rs7813487	1.00[EUR][1000 genomes]
rs7813960	1.00[EUR][1000 genomes]
rs7815526	1.00[EUR][1000 genomes]
rs7819419	1.00[EUR][1000 genomes]
rs7819567	1.00[EUR][1000 genomes]
rs7822422	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823670	1.00[EUR][1000 genomes]
rs7828333	1.00[EUR][1000 genomes]
rs7828388	1.00[EUR][1000 genomes]
rs7832309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833412	1.00[EUR][1000 genomes]
rs7833901	1.00[EUR][1000 genomes]
rs7834312	1.00[EUR][1000 genomes]
rs7837277	1.00[EUR][1000 genomes]
rs7843211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7843375	1.00[EUR][1000 genomes]
rs7843424	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843441	1.00[EUR][1000 genomes]
rs7843588	1.00[EUR][1000 genomes]
rs7843617	1.00[EUR][1000 genomes]
rs7844099	1.00[EUR][1000 genomes]
rs7844501	1.00[EUR][1000 genomes]
rs7845607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9693375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63191000-63209200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63199000-63200000	Enhancers	Fetal Heart	heart

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