Variant report

Variant	rs73683088
Chromosome Location	chr8:63210952-63210953
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs2351648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2351651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4282564	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4478567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4531048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5014328	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55737753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56799220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57116440	0.92[AMR][1000 genomes]
rs57369766	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57527933	1.00[AMR][1000 genomes]
rs59017357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59718717	0.92[AMR][1000 genomes]
rs60095748	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60512270	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472002	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6472004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6981330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6989805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001806	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7002104	0.85[AMR][1000 genomes]
rs7002109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683094	0.92[AMR][1000 genomes]
rs7822422	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7843211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7843424	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7845607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv818632	chr8:63208699-63222881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63209400-63212600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:63209600-63212400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:63209600-63214000	Weak transcription	Brain Germinal Matrix	brain
4	chr8:63209600-63214400	Weak transcription	Fetal Brain Female	brain
5	chr8:63209600-63214600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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