Variant report

Variant	rs698236
Chromosome Location	chr3:23001493-23001494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1683061	0.82[EUR][1000 genomes]
rs2605128	0.82[EUR][1000 genomes]
rs2605129	0.82[EUR][1000 genomes]
rs698237	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs698238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs702042	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs711710	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs711719	0.89[ASN][1000 genomes]
rs711720	0.83[EUR][1000 genomes]
rs822199	0.80[EUR][1000 genomes]
rs822201	0.84[ASN][1000 genomes]
rs822782	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs822793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998236	chr3:22979632-23011352	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23000400-23002000	Enhancers	GM12878-XiMat	blood
2	chr3:23000400-23002000	Enhancers	HUVEC	blood vessel
3	chr3:23000800-23002000	Enhancers	Fetal Lung	lung
4	chr3:23001200-23001600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:23001200-23001600	Enhancers	Fetal Muscle Leg	muscle
6	chr3:23001200-23001800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:23001200-23002000	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:23001200-23002000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:23001200-23002000	Enhancers	Brain Germinal Matrix	brain
10	chr3:23001200-23002000	Enhancers	Fetal Stomach	stomach
11	chr3:23001200-23002000	Enhancers	Ovary	ovary
12	chr3:23001200-23002000	Enhancers	Stomach Smooth Muscle	stomach
13	chr3:23001400-23001600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:23001400-23001600	Weak transcription	Aorta	Aorta
15	chr3:23001400-23001600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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