Variant report

Variant	rs711710
Chromosome Location	chr3:22998569-22998570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1708119	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs698236	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs698237	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs698238	0.83[AMR][1000 genomes]
rs702042	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs711703	0.93[EUR][1000 genomes]
rs711711	0.99[EUR][1000 genomes]
rs711712	0.98[EUR][1000 genomes]
rs822759	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs822777	0.92[ASN][1000 genomes]
rs822778	0.80[EUR][1000 genomes]
rs822780	0.92[EUR][1000 genomes]
rs822782	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs822793	0.87[CEU][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs861090	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998236	chr3:22979632-23011352	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22993400-23000800	Weak transcription	Fetal Lung	lung
2	chr3:22997200-22998600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:22997400-23001200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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