Variant report

Variant	rs822759
Chromosome Location	chr3:22973112-22973113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1094605	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1606478	0.82[ASN][1000 genomes]
rs1671886	0.81[ASN][1000 genomes]
rs1708119	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs696510	0.80[ASN][1000 genomes]
rs696511	0.82[ASN][1000 genomes]
rs702042	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs711703	0.84[EUR][1000 genomes]
rs711710	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs711711	0.80[EUR][1000 genomes]
rs822777	0.94[ASN][1000 genomes]
rs822780	0.82[EUR][1000 genomes]
rs822782	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs861090	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22970200-22976600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:22970400-22975000	Weak transcription	Fetal Lung	lung
3	chr3:22970600-22976400	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:22971000-22976200	Weak transcription	Fetal Stomach	stomach
5	chr3:22971000-22978400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:22971000-22978800	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:22971200-22979000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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