Variant report

Variant	rs861090
Chromosome Location	chr3:22968802-22968803
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1094605	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1606478	0.90[ASN][1000 genomes]
rs1671886	0.88[ASN][1000 genomes]
rs1708119	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs696507	0.85[ASN][1000 genomes]
rs696510	0.86[ASN][1000 genomes]
rs696511	0.88[ASN][1000 genomes]
rs698231	0.85[ASN][1000 genomes]
rs698234	0.87[ASN][1000 genomes]
rs702042	0.82[ASN][1000 genomes]
rs711703	0.83[EUR][1000 genomes]
rs711710	0.82[ASN][1000 genomes]
rs822759	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs822777	0.84[ASN][1000 genomes]
rs822780	0.81[EUR][1000 genomes]
rs822782	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22959600-22969800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:22968800-22969800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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