Variant report

Variant	rs698231
Chromosome Location	chr3:22953628-22953629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1094605	0.94[ASN][1000 genomes]
rs1486334	0.82[YRI][hapmap]
rs1606478	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1606479	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1611855	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1671886	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1708119	0.82[ASN][1000 genomes]
rs1708144	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4858464	0.82[YRI][hapmap]
rs55675454	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs55727454	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6794105	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs696505	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs696506	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs696507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs696510	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs696511	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs698227	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs698229	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs698230	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs698234	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs822764	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs822765	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs822766	0.95[EUR][1000 genomes]
rs822767	0.97[EUR][1000 genomes]
rs861090	0.85[ASN][1000 genomes]
rs9828032	0.82[ASW][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22949800-22956200	Weak transcription	Ovary	ovary
2	chr3:22950600-22956200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links