Variant report

Variant	rs55675454
Chromosome Location	chr3:22966271-22966272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:22963977..22966878-chr4:2943742..2946615,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1606478	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1606479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611855	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1671886	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1708144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55727454	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6794105	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs696505	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs696506	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs696507	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs696510	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs696511	0.96[EUR][1000 genomes]
rs698227	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs698229	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs698230	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs698231	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs698234	0.94[EUR][1000 genomes]
rs822755	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs822764	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs822765	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs822766	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs822767	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22959600-22969800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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