Variant report

Variant	rs696505
Chromosome Location	chr3:22950392-22950393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1486334	0.92[YRI][hapmap]
rs1552391	0.84[AFR][1000 genomes]
rs1552394	0.84[AFR][1000 genomes]
rs1606478	0.92[EUR][1000 genomes]
rs1606479	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1611855	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1671886	0.93[EUR][1000 genomes]
rs1708144	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2129226	0.84[AFR][1000 genomes]
rs2359197	0.84[AFR][1000 genomes]
rs2840062	0.83[AFR][1000 genomes]
rs4858464	0.92[YRI][hapmap]
rs55675454	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55727454	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6794105	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs696502	0.84[AFR][1000 genomes]
rs696503	0.84[AFR][1000 genomes]
rs696506	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs696507	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs696510	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs696511	0.93[EUR][1000 genomes]
rs698227	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs698229	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs698230	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs698231	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs698234	0.91[EUR][1000 genomes]
rs822755	0.92[ASN][1000 genomes]
rs822764	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs822765	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs822766	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs822767	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9811411	0.83[AFR][1000 genomes]
rs9828032	1.00[YRI][hapmap]
rs9844125	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22948600-22950400	Enhancers	Stomach Smooth Muscle	stomach
2	chr3:22948800-22951000	Enhancers	Colon Smooth Muscle	Colon
3	chr3:22949400-22950400	Enhancers	Fetal Stomach	stomach
4	chr3:22949400-22950600	Enhancers	Fetal Lung	lung
5	chr3:22949800-22950800	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:22949800-22956200	Weak transcription	Ovary	ovary

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