Variant report

Variant	rs2840062
Chromosome Location	chr3:22948635-22948636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11129095	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1355736	0.96[EUR][1000 genomes]
rs1355737	0.96[EUR][1000 genomes]
rs1386008	0.97[EUR][1000 genomes]
rs1386009	0.97[EUR][1000 genomes]
rs1386010	0.97[EUR][1000 genomes]
rs1471840	0.96[EUR][1000 genomes]
rs1486334	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1552391	0.99[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1552393	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1552394	0.99[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17012326	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2129226	0.99[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2359197	0.99[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4858462	0.97[EUR][1000 genomes]
rs6550714	0.97[EUR][1000 genomes]
rs6550715	0.97[EUR][1000 genomes]
rs6550716	0.97[EUR][1000 genomes]
rs6795012	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs696505	0.83[AFR][1000 genomes]
rs698230	0.82[AFR][1000 genomes]
rs822765	0.85[AFR][1000 genomes]
rs9811411	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9829835	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9829858	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9832202	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9844125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862213	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9870150	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9870481	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9870770	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9876819	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9876828	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9881354	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22946800-22948800	Weak transcription	Fetal Stomach	stomach
2	chr3:22947200-22949400	Weak transcription	Fetal Lung	lung
3	chr3:22948600-22949000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:22948600-22949000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:22948600-22949000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:22948600-22949000	Enhancers	NH-A	brain
7	chr3:22948600-22949200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:22948600-22949400	Enhancers	HSMMtube	muscle
9	chr3:22948600-22949600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:22948600-22949800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:22948600-22949800	Enhancers	Ovary	ovary
12	chr3:22948600-22950400	Enhancers	Stomach Smooth Muscle	stomach

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