Variant report

Variant	rs9832202
Chromosome Location	chr3:22928011-22928012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11129095	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1355736	0.80[EUR][1000 genomes]
rs1355737	0.80[EUR][1000 genomes]
rs1386008	0.81[EUR][1000 genomes]
rs1386009	0.81[EUR][1000 genomes]
rs1386010	0.81[EUR][1000 genomes]
rs1471840	0.80[EUR][1000 genomes]
rs1486334	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1552391	0.81[EUR][1000 genomes]
rs17012326	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2129226	0.81[EUR][1000 genomes]
rs2359197	0.81[EUR][1000 genomes]
rs2840062	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858462	0.81[EUR][1000 genomes]
rs4858464	0.83[CEU][hapmap]
rs6550714	0.81[EUR][1000 genomes]
rs6550715	0.81[EUR][1000 genomes]
rs6550716	0.81[EUR][1000 genomes]
rs6795012	0.95[ASN][1000 genomes]
rs9811411	0.81[EUR][1000 genomes]
rs9828032	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs9829835	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9829858	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9844125	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9862213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870150	0.81[EUR][1000 genomes]
rs9870481	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9870770	0.81[EUR][1000 genomes]
rs9876819	0.81[EUR][1000 genomes]
rs9876828	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22927000-22928400	Enhancers	Ovary	ovary
2	chr3:22927200-22928200	Enhancers	Fetal Lung	lung
3	chr3:22927400-22928400	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:22927600-22928200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:22927600-22928600	Enhancers	Colon Smooth Muscle	Colon
6	chr3:22927600-22928800	Enhancers	Fetal Brain Female	brain
7	chr3:22927600-22928800	Enhancers	Stomach Smooth Muscle	stomach
8	chr3:22927800-22928200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:22927800-22928200	Enhancers	Adipose Nuclei	Adipose
10	chr3:22927800-22928200	Enhancers	Aorta	Aorta
11	chr3:22927800-22928400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:22927800-22928400	Enhancers	Brain Angular Gyrus	brain
13	chr3:22927800-22928400	Enhancers	Brain Anterior Caudate	brain
14	chr3:22927800-22928400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:22927800-22928400	Enhancers	Brain Substantia Nigra	brain
16	chr3:22927800-22928400	Enhancers	Psoas Muscle	Psoas
17	chr3:22927800-22928400	Enhancers	Right Atrium	heart
18	chr3:22927800-22928400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:22927800-22928400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr3:22927800-22928600	Enhancers	Brain Cingulate Gyrus	brain
21	chr3:22927800-22928800	Enhancers	Brain Hippocampus Middle	brain
22	chr3:22927800-22928800	Enhancers	Fetal Muscle Leg	muscle
23	chr3:22927800-22929200	Enhancers	Fetal Brain Male	brain
24	chr3:22928000-22928400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:22928000-22928400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:22928000-22928400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:22928000-22928400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr3:22928000-22928400	Enhancers	Left Ventricle	heart
29	chr3:22928000-22928400	Enhancers	Sigmoid Colon	Sigmoid Colon

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