Variant report

Variant	rs1355737
Chromosome Location	chr3:22941922-22941923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:22941835-22942063	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:22941835-22942166	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr3:22941867-22942163	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr3:22941832-22942166	MCF10A-Er-Src	breast:	n/a	n/a
5	FAM48A	chr3:22941819-22942009	GM12878	blood:	n/a	n/a
6	CEBPB	chr3:22941868-22942133	HepG2	liver:	n/a	chr3:22942020-22942031
7	STAT3	chr3:22941845-22942094	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr3:22941822-22942149	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:22937203..22939842-chr3:22940484..22942154,2	K562	blood:

Variant related genes	Relation type
RANP7	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11129095	0.87[EUR][1000 genomes]
rs1355736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1386008	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1386009	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1386010	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1471840	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486334	0.96[EUR][1000 genomes]
rs1552391	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1552393	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552394	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17012326	0.87[EUR][1000 genomes]
rs2129226	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2359197	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2840062	0.96[EUR][1000 genomes]
rs4858462	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6550714	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6550715	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6550716	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6795012	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9811411	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9829835	0.82[EUR][1000 genomes]
rs9829858	0.82[EUR][1000 genomes]
rs9832202	0.80[EUR][1000 genomes]
rs9844125	0.96[EUR][1000 genomes]
rs9862213	0.80[EUR][1000 genomes]
rs9870150	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9870481	0.94[EUR][1000 genomes]
rs9870770	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9876819	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9876828	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9881354	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv16397	chr3:22941523-22946888	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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