Variant report

Variant	rs11129095
Chromosome Location	chr3:22936615-22936616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1355736	0.87[EUR][1000 genomes]
rs1355737	0.87[EUR][1000 genomes]
rs1386008	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1386009	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1386010	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1471840	0.87[EUR][1000 genomes]
rs1486334	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1552391	0.88[EUR][1000 genomes]
rs1552394	0.86[EUR][1000 genomes]
rs17012326	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2129226	0.88[EUR][1000 genomes]
rs2359197	0.88[EUR][1000 genomes]
rs2840062	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858462	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4858464	0.85[CEU][hapmap];0.81[YRI][hapmap]
rs6550714	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6550715	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6550716	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6795012	0.95[ASN][1000 genomes]
rs68103588	0.80[EUR][1000 genomes]
rs73051458	0.85[EUR][1000 genomes]
rs9811411	0.88[EUR][1000 genomes]
rs9828032	0.92[CEU][hapmap]
rs9829835	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9829858	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9832202	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9844125	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9862213	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870150	0.88[EUR][1000 genomes]
rs9870481	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9870770	0.88[EUR][1000 genomes]
rs9876819	0.88[EUR][1000 genomes]
rs9876828	0.88[EUR][1000 genomes]
rs9881354	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22934200-22937200	Enhancers	Colon Smooth Muscle	Colon
2	chr3:22934600-22937800	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:22935200-22937200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:22935600-22939200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:22935800-22939600	Weak transcription	Psoas Muscle	Psoas
6	chr3:22936000-22938600	Weak transcription	Fetal Stomach	stomach
7	chr3:22936000-22939600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:22936200-22938600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:22936600-22938400	Weak transcription	Fetal Lung	lung
10	chr3:22936600-22939000	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:22936600-22939600	Weak transcription	Ovary	ovary

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