Variant report

Variant	rs6982384
Chromosome Location	chr8:62657923-62657924
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62657535..62660480-chr8:62666874..62669371,2	K562	blood:
2	chr8:62656958..62658937-chr8:62671143..62673593,2	K562	blood:
3	chr8:62623830..62626750-chr8:62657804..62660228,2	K562	blood:
4	chr8:62650000..62652672-chr8:62657129..62658953,2	MCF-7	breast:
5	chr8:62657788..62659332-chr8:62698415..62700474,2	K562	blood:
6	chr8:62653569..62658048-chr8:62660700..62664543,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10089733	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10094729	0.83[AFR][1000 genomes]
rs10096620	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10098842	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10504332	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11785234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11992715	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs16927584	0.83[CEU][hapmap]
rs16927639	0.83[CEU][hapmap]
rs16927824	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28377995	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28450968	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28453030	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28478791	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28515925	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28537445	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28609354	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28624467	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28662977	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56084352	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6989668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6990434	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6993674	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7006994	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7009874	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7013997	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7014115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7015215	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72659045	0.81[EUR][1000 genomes]
rs72659053	0.81[EUR][1000 genomes]
rs72659065	0.88[EUR][1000 genomes]
rs7835761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62654800-62660600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr8:62657400-62658000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:62657400-62658000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:62657400-62658600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:62657400-62658600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:62657400-62658600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:62657400-62658800	Enhancers	NHDF-Ad	bronchial
8	chr8:62657400-62658800	Enhancers	Osteobl	bone
9	chr8:62657600-62658000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:62657600-62658200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:62657800-62658000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:62657800-62658800	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links