Variant report

Variant	rs10089733
Chromosome Location	chr8:62640353-62640354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62637876..62640545-chr8:62671155..62672770,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10094729	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10096620	0.93[EUR][1000 genomes]
rs10098830	0.82[EUR][1000 genomes]
rs10098842	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110165	0.82[EUR][1000 genomes]
rs10504332	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11784377	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11785234	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11992715	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16927824	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28377995	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28450968	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28453030	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28478791	0.93[EUR][1000 genomes]
rs28515925	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28537445	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28609354	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28624467	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28662977	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4737591	0.81[EUR][1000 genomes]
rs4737592	0.81[EUR][1000 genomes]
rs56084352	0.84[EUR][1000 genomes]
rs6982384	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6989668	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6990434	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6993674	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7006994	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009874	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7013535	0.82[EUR][1000 genomes]
rs7013997	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7014115	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7015215	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7018102	0.82[EUR][1000 genomes]
rs72659045	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72659050	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72659053	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72659065	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7835761	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62634800-62643600	Weak transcription	Stomach Mucosa	stomach
2	chr8:62635600-62643000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:62638000-62643600	Weak transcription	K562	blood
4	chr8:62638200-62640800	Weak transcription	HepG2	liver
5	chr8:62638200-62641600	Weak transcription	Hela-S3	cervix
6	chr8:62638400-62641000	Weak transcription	A549	lung
7	chr8:62639600-62643600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:62640000-62644000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links