Variant report

Variant	rs10098830
Chromosome Location	chr8:62637315-62637316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62637018..62637555-chr8:62704326..62705224,2	MCF-7	breast:
2	chr8:62629746..62631906-chr8:62636531..62638142,2	MCF-7	breast:
3	chr8:62631801..62633703-chr8:62636200..62639165,2	K562	blood:
4	chr8:62637023..62637544-chr8:62693847..62694640,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10089733	0.82[EUR][1000 genomes]
rs10094729	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10098842	0.82[EUR][1000 genomes]
rs10103451	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10110165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112762	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11785234	0.90[AFR][1000 genomes]
rs11787089	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16927809	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28377995	0.95[AFR][1000 genomes]
rs28450968	0.95[AFR][1000 genomes]
rs28453030	0.95[AFR][1000 genomes]
rs28537445	0.95[AFR][1000 genomes]
rs28609354	0.88[AFR][1000 genomes]
rs28624467	0.92[AFR][1000 genomes]
rs28662977	0.94[AFR][1000 genomes]
rs4737591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737592	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6990434	0.94[AFR][1000 genomes]
rs6993674	0.90[AFR][1000 genomes]
rs7006994	0.95[AFR][1000 genomes]
rs7013535	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013997	0.90[AFR][1000 genomes]
rs7014115	0.90[AFR][1000 genomes]
rs7018102	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659056	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72659057	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72659059	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7835761	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62629800-62638400	Flanking Active TSS	A549	lung
2	chr8:62631800-62638000	Enhancers	K562	blood
3	chr8:62634800-62643600	Weak transcription	Stomach Mucosa	stomach
4	chr8:62635600-62643000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:62635800-62637800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:62635800-62638200	Enhancers	Hela-S3	cervix
7	chr8:62636000-62637400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:62636000-62637400	Enhancers	Fetal Heart	heart
9	chr8:62636000-62638200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:62637000-62638200	Enhancers	HepG2	liver
11	chr8:62637200-62637600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:62637200-62637800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:62637200-62637800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr8:62637200-62638000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:62637200-62638000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr8:62637200-62638000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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