Variant report

Variant	rs16927809
Chromosome Location	chr8:62635913-62635914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10094729	0.96[EUR][1000 genomes]
rs10098830	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10103451	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10110165	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10112762	0.94[EUR][1000 genomes]
rs11787089	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs4737591	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4737592	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7013535	0.93[CEU][hapmap];0.96[EUR][1000 genomes]
rs7018102	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72659056	0.80[EUR][1000 genomes]
rs72659057	0.80[EUR][1000 genomes]
rs72659059	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62629800-62638400	Flanking Active TSS	A549	lung
2	chr8:62630000-62636000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:62631200-62636000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:62631800-62636000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr8:62631800-62638000	Enhancers	K562	blood
6	chr8:62633000-62636000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:62634000-62636000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr8:62634600-62636000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:62634600-62636000	Enhancers	Osteobl	bone
10	chr8:62634800-62636400	Enhancers	Adipose Nuclei	Adipose
11	chr8:62634800-62643600	Weak transcription	Stomach Mucosa	stomach
12	chr8:62635000-62637200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:62635600-62636000	Weak transcription	Fetal Heart	heart
14	chr8:62635600-62637000	Weak transcription	HepG2	liver
15	chr8:62635600-62643000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:62635800-62636000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:62635800-62637800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:62635800-62638200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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