Variant report

Variant	rs7018102
Chromosome Location	chr8:62641997-62641998
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62641475..62643115-chr8:62692238..62694630,2	K562	blood:
2	chr8:62632932..62635885-chr8:62641235..62644837,4	K562	blood:
3	chr8:62626128..62628475-chr8:62640834..62643683,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198363	Chromatin interaction
ENSG00000264408	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10089733	0.82[EUR][1000 genomes]
rs10094729	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10098830	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098842	0.82[EUR][1000 genomes]
rs10103451	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10110165	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112762	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11785234	1.00[ASW][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11787089	0.82[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16927809	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28377995	0.91[AFR][1000 genomes]
rs28450968	0.91[AFR][1000 genomes]
rs28453030	0.91[AFR][1000 genomes]
rs28537445	0.91[AFR][1000 genomes]
rs28609354	0.85[AFR][1000 genomes]
rs28624467	0.89[AFR][1000 genomes]
rs28662977	0.90[AFR][1000 genomes]
rs4737591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989668	0.92[ASW][hapmap]
rs6990434	0.92[AFR][1000 genomes]
rs6993674	0.87[AFR][1000 genomes]
rs7006994	0.91[AFR][1000 genomes]
rs7013535	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013997	0.87[AFR][1000 genomes]
rs7014115	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs72659056	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72659057	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72659059	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7835761	1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62634800-62643600	Weak transcription	Stomach Mucosa	stomach
2	chr8:62635600-62643000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:62638000-62643600	Weak transcription	K562	blood
4	chr8:62639600-62643600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:62640000-62644000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:62640800-62642200	Enhancers	HepG2	liver
7	chr8:62641000-62644000	Enhancers	A549	lung
8	chr8:62641600-62642200	Enhancers	Hela-S3	cervix

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