Variant report

Variant	rs6982627
Chromosome Location	chr8:39094161-39094162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10087956	0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10097517	0.88[AMR][1000 genomes]
rs10103435	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10112636	1.00[AMR][1000 genomes]
rs11992272	0.82[AMR][1000 genomes]
rs11994110	0.88[AMR][1000 genomes]
rs11996010	0.89[AMR][1000 genomes]
rs12114061	0.82[AMR][1000 genomes]
rs28715007	0.88[AMR][1000 genomes]
rs34023190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4352814	0.82[AMR][1000 genomes]
rs56413946	0.88[AMR][1000 genomes]
rs6981991	0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6990092	0.82[AMR][1000 genomes]
rs7002593	0.82[AMR][1000 genomes]
rs7008316	0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7011419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7014407	0.89[AMR][1000 genomes]
rs7015352	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7015389	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676819	0.88[AMR][1000 genomes]
rs73676820	0.88[AMR][1000 genomes]
rs7816184	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7821206	0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7821373	0.82[AMR][1000 genomes]
rs7836976	0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015907	chr8:38967169-39718559	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv539550	chr8:38967169-39718559	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1027443	chr8:38993423-39181079	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539551	chr8:38993423-39181079	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv428198	chr8:39069309-39405724	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1019752	chr8:39087542-39371410	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39076200-39097200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:39083200-39097800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:39091600-39098200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:39092000-39094400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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