Variant report

Variant	rs6982954
Chromosome Location	chr8:58825697-58825698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10086387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922796	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28521185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58823600-58825800	Enhancers	Adipose Nuclei	Adipose
2	chr8:58824400-58826200	Enhancers	Fetal Lung	lung
3	chr8:58824800-58826400	Enhancers	Brain Germinal Matrix	brain
4	chr8:58824800-58827200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:58824800-58832800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:58825000-58826000	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:58825200-58826000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:58825400-58825800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:58825400-58825800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr8:58825400-58825800	Weak transcription	Fetal Stomach	stomach
11	chr8:58825400-58825800	Active TSS	NHLF	lung
12	chr8:58825400-58826000	Active TSS	Stomach Smooth Muscle	stomach
13	chr8:58825400-58826200	Enhancers	Liver	Liver
14	chr8:58825600-58825800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:58825600-58825800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:58825600-58826200	Enhancers	Colon Smooth Muscle	Colon
17	chr8:58825600-58826200	Flanking Active TSS	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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