Variant report

Variant	rs6983822
Chromosome Location	chr8:112224412-112224413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1072047	0.83[AMR][1000 genomes]
rs11993102	0.83[AMR][1000 genomes]
rs11993181	0.83[AMR][1000 genomes]
rs11993334	0.83[AMR][1000 genomes]
rs11993388	0.83[AMR][1000 genomes]
rs11994698	0.83[AMR][1000 genomes]
rs11996209	0.83[AMR][1000 genomes]
rs11998055	0.83[AMR][1000 genomes]
rs11998337	0.83[AMR][1000 genomes]
rs11998359	0.83[AMR][1000 genomes]
rs1365736	0.83[AMR][1000 genomes]
rs1427189	0.83[AMR][1000 genomes]
rs16881758	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16881773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16881827	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1991363	0.83[AMR][1000 genomes]
rs4419838	0.90[AFR][1000 genomes]
rs56298818	0.83[AMR][1000 genomes]
rs57905423	0.83[AMR][1000 genomes]
rs58163906	0.83[AMR][1000 genomes]
rs6469342	0.83[AMR][1000 genomes]
rs6469343	0.83[AMR][1000 genomes]
rs6469344	0.83[AMR][1000 genomes]
rs6983857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6985652	0.83[AMR][1000 genomes]
rs6986008	0.83[AMR][1000 genomes]
rs7006174	0.83[AMR][1000 genomes]
rs73706234	0.83[AMR][1000 genomes]
rs73706235	0.83[AMR][1000 genomes]
rs73706236	0.83[AMR][1000 genomes]
rs73706237	0.83[AMR][1000 genomes]
rs73706238	0.83[AMR][1000 genomes]
rs7827542	0.83[AMR][1000 genomes]
rs7833747	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv891302	chr8:111987798-112238390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv891306	chr8:112021630-112238390	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv891310	chr8:112079211-112238390	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv891311	chr8:112088322-112604086	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv891312	chr8:112111911-112238390	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1034184	chr8:112171949-112274721	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112223800-112224600	Enhancers	HMEC	breast
2	chr8:112224000-112225200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:112224400-112224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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