Variant report

Variant	rs6983857
Chromosome Location	chr8:112254658-112254659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1072047	0.83[AMR][1000 genomes]
rs11993102	0.83[AMR][1000 genomes]
rs11993181	0.83[AMR][1000 genomes]
rs11993334	0.83[AMR][1000 genomes]
rs11993388	0.83[AMR][1000 genomes]
rs11994698	0.83[AMR][1000 genomes]
rs11996209	0.83[AMR][1000 genomes]
rs11998055	0.83[AMR][1000 genomes]
rs11998337	0.83[AMR][1000 genomes]
rs11998359	0.83[AMR][1000 genomes]
rs12156391	0.91[YRI][hapmap]
rs1365736	0.83[AMR][1000 genomes]
rs1427189	0.83[AMR][1000 genomes]
rs16881758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16881773	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16881806	1.00[YRI][hapmap]
rs16881827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1991363	0.83[AMR][1000 genomes]
rs4364659	1.00[YRI][hapmap]
rs4419838	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs56298818	0.83[AMR][1000 genomes]
rs57905423	0.83[AMR][1000 genomes]
rs58163906	0.83[AMR][1000 genomes]
rs6469342	0.83[AMR][1000 genomes]
rs6469343	0.83[AMR][1000 genomes]
rs6469344	0.83[AMR][1000 genomes]
rs6983822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6985652	0.83[AMR][1000 genomes]
rs6986008	0.83[AMR][1000 genomes]
rs7006174	0.83[AMR][1000 genomes]
rs73706234	0.83[AMR][1000 genomes]
rs73706235	0.83[AMR][1000 genomes]
rs73706236	0.83[AMR][1000 genomes]
rs73706237	0.83[AMR][1000 genomes]
rs73706238	0.83[AMR][1000 genomes]
rs7827542	0.83[AMR][1000 genomes]
rs7833747	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv891311	chr8:112088322-112604086	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1034184	chr8:112171949-112274721	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112254000-112254800	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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