Variant report
| Variant | rs6984456 |
|---|---|
| Chromosome Location | chr8:67267364-67267365 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RRS1-3 | chr8:67266900-67267756 | ucscGeneNc_uc003xvz_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10095385 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17404672 | 0.87[ASN][1000 genomes] |
| rs1978566 | 0.91[CEU][hapmap] |
| rs2114487 | 0.87[ASN][1000 genomes] |
| rs2162420 | 0.87[ASN][1000 genomes] |
| rs56332328 | 0.87[ASN][1000 genomes] |
| rs56747323 | 0.87[ASN][1000 genomes] |
| rs57935379 | 0.87[ASN][1000 genomes] |
| rs7015255 | 1.00[JPT][hapmap] |
| rs73691528 | 0.87[ASN][1000 genomes] |
| rs7834793 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7846153 | 0.87[ASN][1000 genomes] |
| rs9693831 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | esv3414665 | chr8:66936816-67381935 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:7)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6984456 | ADHFE1 | cis | Thyroid | GTEx |
| rs6984456 | C8orf46 | cis | Adipose Subcutaneous | GTEx |
| rs6984456 | ADHFE1 | cis | Nerve Tibial | GTEx |
| rs6984456 | C8orf46 | cis | Esophagus Muscularis | GTEx |
| rs6984456 | C8orf46 | cis | Thyroid | GTEx |
| rs6984456 | ADHFE1 | cis | Artery Tibial | GTEx |
| rs6984456 | ADHFE1 | cis | Skin Sun Exposed Lower leg | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:67265400-67268800 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
