Variant report

Variant	rs7846153
Chromosome Location	chr8:67256072-67256073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10095385	0.87[ASN][1000 genomes]
rs12545784	0.83[EUR][1000 genomes]
rs17404672	1.00[ASN][1000 genomes]
rs2114487	1.00[ASN][1000 genomes]
rs2162420	1.00[ASN][1000 genomes]
rs34077648	0.80[AFR][1000 genomes]
rs56332328	1.00[ASN][1000 genomes]
rs56747323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57935379	1.00[ASN][1000 genomes]
rs58055402	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61747714	0.80[AFR][1000 genomes]
rs62511161	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62511166	0.84[AFR][1000 genomes]
rs62511169	0.84[AFR][1000 genomes]
rs62511171	0.84[AFR][1000 genomes]
rs62511172	0.84[AFR][1000 genomes]
rs62511173	0.84[AFR][1000 genomes]
rs62511174	0.84[AFR][1000 genomes]
rs62511177	0.84[AFR][1000 genomes]
rs62511179	0.80[AFR][1000 genomes]
rs62511946	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62511948	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62511950	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62511951	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6472272	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6984456	0.87[ASN][1000 genomes]
rs7002496	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7010555	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7015255	0.84[AFR][1000 genomes]
rs73691528	1.00[ASN][1000 genomes]
rs7813259	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7834793	0.87[ASN][1000 genomes]
rs9693831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67252600-67266800	Weak transcription	Psoas Muscle	Psoas
2	chr8:67253000-67256600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:67253000-67256800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:67253800-67259600	Enhancers	Placenta	Placenta
5	chr8:67255600-67256200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:67256000-67256800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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