Variant report

Variant	rs6985171
Chromosome Location	chr8:64264335-64264336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12543244	0.92[EUR][1000 genomes]
rs12682353	0.92[EUR][1000 genomes]
rs16930419	0.85[EUR][1000 genomes]
rs4737642	0.86[EUR][1000 genomes]
rs4739081	0.85[EUR][1000 genomes]
rs57575822	0.90[EUR][1000 genomes]
rs6989326	0.86[EUR][1000 genomes]
rs72661741	0.85[EUR][1000 genomes]
rs72661748	0.90[EUR][1000 genomes]
rs72661749	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72661776	0.94[EUR][1000 genomes]
rs72661780	0.94[EUR][1000 genomes]
rs72661799	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72663806	0.90[AMR][1000 genomes]
rs72663807	0.90[AMR][1000 genomes]
rs72663809	0.86[AMR][1000 genomes]
rs72663811	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72663816	0.90[AMR][1000 genomes]
rs72663819	0.90[AMR][1000 genomes]
rs72663820	0.90[AMR][1000 genomes]
rs72663825	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7463061	0.86[EUR][1000 genomes]
rs7835147	0.90[EUR][1000 genomes]
rs7838636	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64263200-64275000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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