Variant report

Variant	rs7463061
Chromosome Location	chr8:64277503-64277504
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12543244	0.90[EUR][1000 genomes]
rs12682353	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16930419	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4737642	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57575822	0.85[EUR][1000 genomes]
rs6985171	0.86[EUR][1000 genomes]
rs6989326	0.81[EUR][1000 genomes]
rs72661748	0.85[EUR][1000 genomes]
rs72661749	0.83[EUR][1000 genomes]
rs72661776	0.92[EUR][1000 genomes]
rs72661780	0.92[EUR][1000 genomes]
rs7835147	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64274800-64278000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr8:64274800-64278400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr8:64274800-64278600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:64274800-64279200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:64274800-64279200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:64275000-64278200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:64275200-64278200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:64275800-64278000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:64275800-64279000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:64276000-64278400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:64276000-64278800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:64276000-64279200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:64276000-64279400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:64276400-64277600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:64276800-64278400	Weak transcription	Brain Germinal Matrix	brain
16	chr8:64276800-64279400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr8:64277000-64277800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:64277000-64278000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:64277000-64278200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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